phylopath: Perform Phylogenetic Path Analysis

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A comprehensive and easy to use R implementation of confirmatory phylogenetic path analysis as described by Von Hardenberg and Gonzalez-Voyer (2012) <doi:10.1111/j.1558-5646.2012.01790.x>.

Author
Wouter van der Bijl
Date of publication
2016-11-10 08:19:05
Maintainer
Wouter van der Bijl <wouter.van.der.bijl@zoologi.su.se>
License
GPL-3
Version
0.2.1
URLs

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Man pages

average
Extract and average the best supported models for a...
average_DAGs
Perform model averaging on a list of DAGs.
best
Extract and estimate the best supported model for a...
coef_plot
Plot path coefficients and their confidence intervals.
DAG
Directed acyclic graphs (DAGs)
est_DAG
Add standardized path coefficients to a DAG.
phylo_path
Compare causal models in a phylogenetic context.
rhino
Rhinogrades traits
rhino_tree
Rhinogrades phylogeny

Files in this package

phylopath
phylopath/inst
phylopath/inst/doc
phylopath/inst/doc/intro_to_phylopath.html
phylopath/inst/doc/intro_to_phylopath.Rmd
phylopath/inst/doc/intro_to_phylopath.R
phylopath/NAMESPACE
phylopath/NEWS.md
phylopath/data
phylopath/data/rhino_tree.rda
phylopath/data/rhino.rda
phylopath/R
phylopath/R/DAG.R
phylopath/R/data_docs.R
phylopath/R/phylopath.R
phylopath/R/internal.R
phylopath/R/print_and_plot.R
phylopath/vignettes
phylopath/vignettes/Vignette_figures
phylopath/vignettes/Vignette_figures/fig2.png
phylopath/vignettes/Vignette_figures/fig1.png
phylopath/vignettes/Vignette_figures/fig3.png
phylopath/vignettes/Vignette_figures/fig4.png
phylopath/vignettes/intro_to_phylopath.Rmd
phylopath/MD5
phylopath/build
phylopath/build/vignette.rds
phylopath/DESCRIPTION
phylopath/man
phylopath/man/coef_plot.Rd
phylopath/man/best.Rd
phylopath/man/DAG.Rd
phylopath/man/phylo_path.Rd
phylopath/man/rhino_tree.Rd
phylopath/man/average_DAGs.Rd
phylopath/man/rhino.Rd
phylopath/man/average.Rd
phylopath/man/est_DAG.Rd