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phylosim: Flexible Simulations of Biological Sequence Evolution
An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment <doi:10.1186/1471-2105-12-104>.
Getting started
Browse package contents
Package details |
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| Author | Botond Sipos <sbotond@gmail.com>, Gregory Jordan <greg@ebi.ac.uk> |
| Maintainer | Botond Sipos <sbotond@gmail.com> |
| License | GPL (>= 3) |
| Version | 3.0.5 |
| URL | https://github.com/bsipos/phylosim |
| Package repository | View on CRAN |
| Installation |
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