buildFromPAML.CodonSubst: Build rate matrix from PAML file
In phylosim: Flexible Simulations of Biological Sequence Evolution
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Build rate matrix from PAML file.
Usage
1
2
## S3 method for class 'CodonSubst'
buildFromPAML(this, paml.file, ...)
Arguments
this
A CodonSubst object.
paml.file
Path to the PAML file.
...
Not used.
Value
The CodonSubst object (invisible).
Author(s)
Botond Sipos, Gregory Jordan
See Also
For more information see CodonSubst.
Examples
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# create an object
p<-CodonSubst()
# build rate matrix from paml file
# buildFromPAML(p,"path_to_paml_file") # do not run this
# get object summary
summary(p)
phylosim documentation built on Nov. 22, 2019, 1:07 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Build rate matrix from PAML file.
Usage
1 2 | ## S3 method for class 'CodonSubst'
buildFromPAML(this, paml.file, ...)
|
Arguments
this |
A CodonSubst object. |
paml.file |
Path to the PAML file. |
... |
Not used. |
Value
The CodonSubst object (invisible).
Author(s)
Botond Sipos, Gregory Jordan
See Also
For more information see CodonSubst.
Examples
1 2 3 4 5 6 7 | # create an object
p<-CodonSubst()
# build rate matrix from paml file
# buildFromPAML(p,"path_to_paml_file") # do not run this
# get object summary
summary(p)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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