buildFromPAML.CodonSubst: Build rate matrix from PAML file

Description Usage Arguments Value Author(s) See Also Examples

Description

Build rate matrix from PAML file.

Usage

1
2
## S3 method for class 'CodonSubst'
buildFromPAML(this, paml.file, ...)

Arguments

this

A CodonSubst object.

paml.file

Path to the PAML file.

...

Not used.

Value

The CodonSubst object (invisible).

Author(s)

Botond Sipos, Gregory Jordan

See Also

For more information see CodonSubst.

Examples

1
2
3
4
5
6
7
	# create an object
	p<-CodonSubst()
	# build rate matrix from paml file
	# buildFromPAML(p,"path_to_paml_file")	# do not run this
	# get object summary
	summary(p)
 

phylosim documentation built on Nov. 22, 2019, 1:07 a.m.