buildFromPAML.AminoAcidSubst: Build rate matrix from PAML file
In phylosim: Flexible Simulations of Biological Sequence Evolution
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Build rate matrix from PAML file.
Usage
1
2
## S3 method for class 'AminoAcidSubst'
buildFromPAML(this, paml.file, ...)
Arguments
this
An AminoAcidSubst object.
paml.file
Path to the PAML file.
...
Not used.
Value
The AminoAcidSubst object (invisible).
Author(s)
Botond Sipos, Gregory Jordan
See Also
For more information see AminoAcidSubst.
Examples
1
2
3
4
5
6
7
# create an object
p<-AminoAcidSubst()
# build rate matrix from paml file
# buildFromPAML(p,"path_to_paml_file") # do not run this
# get object summary
summary(p)
phylosim documentation built on Nov. 22, 2019, 1:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
Build rate matrix from PAML file.
Usage
1 2 | ## S3 method for class 'AminoAcidSubst'
buildFromPAML(this, paml.file, ...)
|
Arguments
this |
An AminoAcidSubst object. |
paml.file |
Path to the PAML file. |
... |
Not used. |
Value
The AminoAcidSubst object (invisible).
Author(s)
Botond Sipos, Gregory Jordan
See Also
For more information see AminoAcidSubst.
Examples
1 2 3 4 5 6 7 | # create an object
p<-AminoAcidSubst()
# build rate matrix from paml file
# buildFromPAML(p,"path_to_paml_file") # do not run this
# get object summary
summary(p)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.