Files in phyr
Model Based Phylogenetic Analysis

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R R/psv.R R/data.R R/pglmm.R R/pcd.R R/cor_phylo.R R/pglmm-plot.R R/pglmm_compare.R R/pglmm-utils.R R/utils.R
src/cor_phylo.cpp
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/binaryPGLMM.cpp
src/cor_phylo.h
src/pcd.cpp
src/pglmm_binary.cpp
src/psv.cpp
src/pglmm_gaussian.cpp
inst/doc/plot-re.Rmd inst/doc/pglmm.R inst/doc/benchmarks.Rmd
inst/doc/benchmarks.html
inst/doc/pglmm.html
inst/doc/plot-re.R inst/doc/pglmm.Rmd inst/doc/benchmarks.R
inst/doc/plot-re.html
inst/extra_data/phylotree_large.rds
inst/extra_data/comm_large.rds
build/vignette.rds
tests/testthat.R tests/testthat/test-psv.R tests/testthat/test-utils.R tests/testthat/test-pglmm_compare.R tests/testthat/test_pglmm_utils.R tests/testthat/test-pcd.R tests/testthat/test-cor_phylo.R tests/testthat/test-pglmm.R vignettes/plot-re.Rmd vignettes/benchmarks.Rmd vignettes/pglmm.Rmd
data/traits.rda
data/phylotree.rda
data/envi.rda
data/comm_b.rda
data/oldfield.rda
data/comm_a.rda
man/pglmm-profile-LRT.Rd man/nobs.communityPGLMM.Rd man/nin.Rd man/predict.communityPGLMM.Rd man/pglmm-plot-data.Rd man/phylotree.Rd man/pglmm-plot-re.Rd man/comm_a.Rd man/summary.communityPGLMM.Rd man/oldfield.Rd man/print.pglmm_compare.Rd man/pglmm_compare.Rd man/pcd.Rd man/summary.pglmm_compare.Rd man/pglmm-matrix-structure.Rd man/pglmm.Rd man/residuals.communityPGLMM.Rd man/vcv2.Rd man/ranef.Rd man/model.frame.communityPGLMM.Rd man/pcd_pred.Rd man/plot_bayes.Rd man/family.communityPGLMM.Rd man/refit_boots.Rd man/boot_ci.Rd man/prep_dat_pglmm.Rd man/match_comm_tree.Rd man/rm_site_noobs.Rd man/psd.Rd man/simulate.communityPGLMM.Rd man/traits.Rd man/pglmm-predicted-values.Rd man/print.communityPGLMM.Rd man/get_design_matrix_pglmm.Rd man/envi.Rd man/cor_phylo.Rd man/fixef.Rd man/fitted.communityPGLMM.Rd man/rm_sp_noobs.Rd man/comm_b.Rd man/align_comm_V.Rd
phyr documentation built on Jan. 13, 2021, 5:40 p.m.