Files in phyr
Model Based Phylogenetic Analysis
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/psv.R
R/data.R
R/pglmm.R
R/pcd.R
R/cor_phylo.R
R/pglmm-plot.R
R/pglmm_compare.R
R/pglmm-utils.R
R/utils.R
src/cor_phylo.cpp
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/binaryPGLMM.cpp
src/cor_phylo.h
src/pcd.cpp
src/pglmm_binary.cpp
src/psv.cpp
src/pglmm_gaussian.cpp
inst/doc/plot-re.Rmd
inst/doc/pglmm.R
inst/doc/benchmarks.Rmd
inst/doc/benchmarks.html
inst/doc/pglmm.html
inst/doc/plot-re.R
inst/doc/pglmm.Rmd
inst/doc/benchmarks.R
inst/doc/plot-re.html
inst/extra_data/phylotree_large.rds
inst/extra_data/comm_large.rds
build/vignette.rds
tests/testthat.R
tests/testthat/test-psv.R
tests/testthat/test-utils.R
tests/testthat/test-pglmm_compare.R
tests/testthat/test_pglmm_utils.R
tests/testthat/test-pcd.R
tests/testthat/test-cor_phylo.R
tests/testthat/test-pglmm.R
vignettes/plot-re.Rmd
vignettes/benchmarks.Rmd
vignettes/pglmm.Rmd
data/traits.rda
data/phylotree.rda
data/envi.rda
data/comm_b.rda
data/oldfield.rda
data/comm_a.rda
man/pglmm-profile-LRT.Rd
man/nobs.communityPGLMM.Rd
man/nin.Rd
man/predict.communityPGLMM.Rd
man/pglmm-plot-data.Rd
man/phylotree.Rd
man/pglmm-plot-re.Rd
man/comm_a.Rd
man/summary.communityPGLMM.Rd
man/oldfield.Rd
man/print.pglmm_compare.Rd
man/pglmm_compare.Rd
man/pcd.Rd
man/summary.pglmm_compare.Rd
man/pglmm-matrix-structure.Rd
man/pglmm.Rd
man/residuals.communityPGLMM.Rd
man/vcv2.Rd
man/ranef.Rd
man/model.frame.communityPGLMM.Rd
man/pcd_pred.Rd
man/plot_bayes.Rd
man/family.communityPGLMM.Rd
man/refit_boots.Rd
man/boot_ci.Rd
man/prep_dat_pglmm.Rd
man/match_comm_tree.Rd
man/rm_site_noobs.Rd
man/psd.Rd
man/simulate.communityPGLMM.Rd
man/traits.Rd
man/pglmm-predicted-values.Rd
man/print.communityPGLMM.Rd
man/get_design_matrix_pglmm.Rd
man/envi.Rd
man/cor_phylo.Rd
man/fixef.Rd
man/fitted.communityPGLMM.Rd
man/rm_sp_noobs.Rd
man/comm_b.Rd
man/align_comm_V.Rd
