check_ancestry | Identification of individuals of divergent ancestry |
checkFiltering | Check and construct PLINK sample and marker filters |
check_het_and_miss | Identification of individuals with outlying missing genotype... |
check_hwe | Identification of SNPs showing a significant deviation from... |
check_maf | Identification of SNPs with low minor allele frequency |
checkPlink | Check PLINK software access |
check_relatedness | Identification of related individuals |
checkRemoveIDs | Check and construct individual IDs to be removed |
check_sex | Identification of individuals with discordant sex information |
check_snp_missingness | Identification of SNPs with high missingness rate |
cleanData | Create plink dataset with individuals and markers passing... |
evaluate_check_ancestry | Evaluate results from PLINK PCA on combined study and... |
evaluate_check_het_and_miss | Evaluate results from PLINK missing genotype and... |
evaluate_check_relatedness | Evaluate results from PLINK IBD estimation. |
evaluate_check_sex | Evaluate results from PLINK sex check. |
overviewPerIndividualQC | Overview of per sample QC |
overviewPerMarkerQC | Overview of per marker QC |
perIndividualQC | Quality control for all individuals in plink-dataset |
perMarkerQC | Quality control for all markers in plink-dataset |
plinkQC | plinkQC |
relatednessFilter | Remove related individuals while keeping maximum number of... |
run_check_ancestry | Run PLINK principal component analysis |
run_check_heterozygosity | Run PLINK heterozygosity rate calculation |
run_check_missingness | Run PLINK missingness rate calculation |
run_check_relatedness | Run PLINK IBD estimation |
run_check_sex | Run PLINK sexcheck |
testNumerics | Test lists for different properties of numerics |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.