AreaPlotAtomic: Atomic area plot
In plotthis: High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages

AreaPlotAtomic

R Documentation

Atomic area plot

Description

Atomic area plot

Usage

AreaPlotAtomic(
  data,
  x,
  y = NULL,
  x_sep = "_",
  group_by = NULL,
  group_by_sep = "_",
  group_name = NULL,
  scale_y = FALSE,
  theme = "theme_this",
  theme_args = list(),
  palette = "Paired",
  palcolor = NULL,
  alpha = 1,
  facet_by = NULL,
  facet_scales = "fixed",
  facet_ncol = NULL,
  facet_nrow = NULL,
  facet_byrow = TRUE,
  x_text_angle = 0,
  aspect.ratio = 1,
  legend.position = waiver(),
  legend.direction = "vertical",
  title = NULL,
  subtitle = NULL,
  xlab = NULL,
  ylab = NULL,
  keep_empty = FALSE,
  ...
)

Arguments

`data`	A data frame.
`x`	A character string of the column name to plot on the x-axis. A character/factor column is expected.
`y`	A character string of the column name to plot on the y-axis. A numeric column is expected. If NULL, the count of the x-axis column will be used.
`x_sep`	A character string to concatenate the columns in `x`, if multiple columns are provided.
`group_by`	A character vector of column names to fill the area plot by. If NULL, the plot will be filled by the first color of the palette. If multiple columns are provided, the columns will be concatenated with `group_by_sep` and used as the fill column.
`group_by_sep`	A character string to separate the columns in `group_by`.
`group_name`	A character string to name the legend of fill.
`scale_y`	A logical value to scale the y-axis by the total number in each x-axis group.
`theme`	A character string or a theme class (i.e. ggplot2::theme_classic) specifying the theme to use. Default is "theme_this".
`theme_args`	A list of arguments to pass to the theme function.
`palette`	A character string specifying the palette to use. A named list or vector can be used to specify the palettes for different `split_by` values.
`palcolor`	A character string specifying the color to use in the palette. A named list can be used to specify the colors for different `split_by` values. If some values are missing, the values from the palette will be used (palcolor will be NULL for those values).
`alpha`	A numeric value specifying the transparency of the plot.
`facet_by`	A character string specifying the column name of the data frame to facet the plot. Otherwise, the data will be split by `split_by` and generate multiple plots and combine them into one using `patchwork::wrap_plots`
`facet_scales`	Whether to scale the axes of facets. Default is "fixed" Other options are "free", "free_x", "free_y". See `ggplot2::facet_wrap`
`facet_ncol`	A numeric value specifying the number of columns in the facet. When facet_by is a single column and facet_wrap is used.
`facet_nrow`	A numeric value specifying the number of rows in the facet. When facet_by is a single column and facet_wrap is used.
`facet_byrow`	A logical value indicating whether to fill the plots by row. Default is TRUE.
`x_text_angle`	A numeric value specifying the angle of the x-axis text.
`aspect.ratio`	A numeric value specifying the aspect ratio of the plot.
`legend.position`	A character string specifying the position of the legend. if `waiver()`, for single groups, the legend will be "none", otherwise "right".
`legend.direction`	A character string specifying the direction of the legend.
`title`	A character string specifying the title of the plot. A function can be used to generate the title based on the default title. This is useful when split_by is used and the title needs to be dynamic.
`subtitle`	A character string specifying the subtitle of the plot.
`xlab`	A character string specifying the x-axis label.
`ylab`	A character string specifying the y-axis label.
`keep_empty`	A logical value indicating whether to keep empty groups. If FALSE, empty groups will be removed.
`...`	Additional arguments.