Man pages for plotthis
High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages
| adjcolors | Convert a color with arbitrary transparency to a fixed color |
| adjust_network_layout | Adjust_network_layout |
| AreaPlot | Area plot |
| AreaPlotAtomic | Atomic area plot (internal) |
| barplot | Bar / SplitBar / Waterfall Plot |
| BarPlotAtomic | Atomic bar plot (internal) |
| BarPlotGrouped | Bar plot with groups |
| BarPlotSingle | Single bar plot (no groups) |
| bg_layer | Get a ggplot layer for background |
| blend_colors | Blend colors |
| blend_rgblist | Blend a list of colors |
| blend_to_color | Blend two colors |
| boxviolinplot | Box / Violin / Bar / Beeswarm plot |
| BoxViolinPlotAtomic | Atomic Box / Violin / Bar / Beeswarm plot (internal) |
| BoxViolinPlot-internal | Box / Violin / Bar / Beeswarm plot (internal) |
| calc_just | Calculate hjust and vjust based on angle |
| calculate_plot_dimensions | Calculate plot dimensions with aspect ratio consideration |
| check_columns | Check the columns if columns found in the data |
| check_keep_empty | check_keep_empty Check and normalize keep_empty parameter |
| check_keep_na | check_keep_na Check and normalize keep_na parameter |
| check_legend | check_legend Check if the legend.position and... |
| check_palcolor | check_palcolor Check if the palcolor can be properly used |
| check_palette | check_palette Check if the palette can be properly used |
| chordplot | Chord / Circos plot |
| ChordPlotAtomic | Atomic chord plot (internal) |
| ClustreePlot | Clustree Plot |
| ClustreePlotAtomic | Atomic clustree plot |
| combine_plots | Combine plots into one |
| common_args | Common arguments for plots |
| CorPairsPlot | Correlation pairs (scatterplot matrix) |
| CorPairsPlotAtomic | Atomic Correlation Pairs Plot |
| CorPlot | Correlation scatter plot |
| CorPlotAtomic | Atomic Correlation Plot |
| densityhistoplot | Density Plot / Histogram |
| DensityHistoPlotAtomic | Atomic density/histogram plot |
| detect_upset_datatype | Detect the type of the input data for an UpSet plot |
| detect_venn_datatype | Detect the input data format for Venn diagram processing |
| dim_example | An example data for dimensionality reduction plot |
| dimplot | DimPlot / FeatureDimPlot |
| DimPlotAtomic | Atomic Dimension Reduction Plot without splitting the data |
| DimPlotAtomic3D | Internal helper to create a 3D dimension reduction plot using... |
| do_call | Call a function with a list of arguments |
| dot-anno_ggcat | Heatmap annotation function for categorical data |
| dot-apply_orderby | Apply ordering to a data frame based on a specified... |
| dot-check_annotation | Check the annotation specification The annotations should not... |
| dot-compute_velocity_on_grid | Compute velocity on a regular grid from sparse cell... |
| dot_flip_y | Flip y-coordinates for spatial data objects |
| dot-gggrob | Get the grid.draw-able ggplot grob The output from ggplotGrob... |
| dotplot | Dot Plot, Scatter Plot, and Lollipop Plot |
| DotPlotAtomic | Atomic dot/lollipop plot |
| dot-prep_annotations | Prepare and normalize annotation arguments |
| dot-prepare_extent | Prepare the extent for spatial plots |
| dot-reorder_anno_side | Reorder annotation list so split annotation (split_by) is... |
| dot-resolve_anno_aliases | Resolve annotation aliases: .row -> rows_by .rows.split ->... |
| dot-setup_annos | Unified annotation builder for built-in (split/name) and... |
| dot-wrap_spatial_layers | Wrap spatial plot if plotted independently |
| element_textbox | Theme element that add a box to the text |
| enrich_example | An example of clusterProfiler enrichment result |
| enrichmap1 | Enrichment Map and Enrichment Network |
| EnrichMapAtomic | Atomic enrichment map (internal) |
| enrich_multidb_example | An example of clusterProfiler enrichment result with multiple... |
| EnrichNetworkAtomic | Atomic enrichment network (internal) |
| facet_plot | Facetting a plot |
| get_cutoffs_data | Prepare cutoff data for ROC curve annotation |
| gsea | GSEA summary dot plot |
| gsea_example | An example of GSEA result from fgsea package |
| GSEAPlotAtomic | Atomic GSEA plot (internal) |
| gsea_running_score | Get the running enrichment score of a gene set |
| Heatmap | Heatmap |
| heatmap-anno | Heatmap annotation functions |
| HeatmapAtomic | Atomic heatmap (internal) |
| heatmap-layer | Heatmap layer functions used to draw on the heatmap cells |
| jitterplot | Jitter plot |
| JitterPlotAtomic | Atomic jitter plot (internal) |
| join_heatmap_meta | Join the meta data to the main data frame for heatmap |
| LinePlot | Line plot |
| LinePlotAtomic | Atomic line-plot dispatcher (internal) |
| LinePlotGrouped | Multi-series line plot (internal) |
| LinePlotSingle | Single-series line plot (internal) |
| LinkedHeatmap | Linked Heatmap |
| LinkedHeatmapAtomic | Atomic linked heatmap (internal) |
| ManhattanPlot | Manhattan plot |
| ManhattanPlotAtomic | Atomic Manhattan plot (internal) |
| Network | Network |
| NetworkAtomic | NetworkAtomic |
| norm_expansion | Expand the plot area with CSS-like padding |
| palette_list | A list of palettes for use in data visualization |
| palette_this | Color palettes collected in plotthis. |
| PieChart | Pie chart |
| PieChartAtomic | Atomic pie chart (internal) |
| prepare_continuous_color_scale | Prepare continuous color scale limits with quantile/cutoff... |
| prepare_enrichr_result | Process the enrichment results from Enrichr |
| prepare_fgsea_result | Prepare fgsea result for plotting |
| prepare_upset_data | Prepare data for an UpSet plot |
| prepare_venn_data | Prepare input data for Venn diagram rendering |
| process_heatmap_data | Process/normalize data passed to 'Heatmap()' |
| process_keep_na_empty | process_keep_na_empty Process keep_na and keep_empty to data |
| process_linkedheatmap_data | Process data for LinkedHeatmap |
| process_theme | Process theme to allow 'ggplot2::theme_minimal' to work |
| QQPlot | QQ/PP plot |
| QQPlotAtomic | Atomic QQ/PP plot |
| radarplot | Radar plot / Spider plot |
| RadarPlotAtomic | Atomic radar/spider plot (internal) |
| RarefactionPlot | Rarefaction / extrapolation plot |
| RarefactionPlotAtomic | Atomic rarefaction / extrapolation plot (internal) |
| rgba_to_rgb | Convert RGBA to RGB |
| RidgePlot | Ridge Plot |
| RidgePlotAtomic | Atomic ridge plot |
| RingPlot | Ring plot (multi-layer donut chart) |
| RingPlotAtomic | Atomic ring plot (internal) |
| ROCCurve | ROC curve |
| ROCCurveAtomic | Atomic ROC curve (internal) |
| sankeyplot | Sankey / Alluvial Plot |
| SankeyPlotAtomic | Atomic Sankey / alluvial diagram (internal) |
| ScatterPlot | Scatter Plot |
| ScatterPlotAtomic | Atomic scatter plot (internal) |
| show_palettes | Show the color palettes |
| spatialplots | Spatial visualization functions for terra objects and point... |
| SplitBarPlotAtomic | Atomic split bar plot (internal) |
| theme_blank | Blank theme |
| theme_box | Box theme |
| theme_this | A ggplot2 theme and palettes for plotthis Borrowed from the... |
| TrendPlot | Trend plot |
| TrendPlotAtomic | Atomic trend plot (internal) |
| UpsetPlot | UpSet Plot |
| UpsetPlotAtomic | Atomic UpSet plot (internal) |
| validate_common_args | Validate common arguments |
| VelocityPlot | Cell velocity plot |
| VennDiagram | Venn / Euler diagram |
| VennDiagramAtomic | Atomic Venn / Euler diagram (internal) |
| VolcanoPlot | Volcano plot |
| VolcanoPlotAtomic | Atomic volcano plot (internal) |
| WordCloudPlot | Word cloud plot |
| WordCloudPlotAtomic | Word cloud plot (internal) |
| words_excluded | Excluded words in keyword enrichment analysis and extraction |
