QQPlotAtomic: Atomic QQ plot
In plotthis: High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages

QQPlotAtomic

R Documentation

Atomic QQ plot

Description

Atomic QQ plot

Usage

QQPlotAtomic(
  data,
  val,
  val_trans = NULL,
  type = c("qq", "pp"),
  band = NULL,
  line = list(),
  point = list(),
  fill_name = "Bands",
  band_alpha = 0.5,
  theme = "theme_this",
  theme_args = list(),
  palette = "Spectral",
  palcolor = NULL,
  facet_by = NULL,
  facet_scales = "fixed",
  facet_ncol = NULL,
  facet_nrow = NULL,
  facet_byrow = TRUE,
  aspect.ratio = 1,
  legend.position = waiver(),
  legend.direction = "vertical",
  title = NULL,
  subtitle = NULL,
  seed = 8525,
  xlim = NULL,
  ylim = NULL,
  xlab = ifelse(type == "qq", "Theoretical Quantiles", "Probability Points"),
  ylab = ifelse(type == "qq", "Sample Quantiles", "Cumulative Probability"),
  ...
)

Arguments

`data`	A data frame.
`val`	A character string of the column name for the values to plot. A numeric column is expected.
`val_trans`	A function to transform the values before plotting. Default is NULL, which means no transformation.
`type`	A character string to specify the type of plot. Default is "qq", which means QQ plot. Other options are "pp", which means PP plot.
`band`	A list of arguments to pass to `qqplotr::stat_qq_band()` or `qqplotr::stat_pp_band()`, depending on the value of `type`. Default is NULL, which means no band. If an empty list or TRUE is provided, the default arguments will be used. Multiple bands can be added by providing a list of lists.
`line`	A list of arguments to pass to `qqplotr::stat_qq_line()` or `qqplotr::stat_pp_line()`, depending on the value of `type`. Default is `list()`, which means to add a line with default arguments. If `NULL` is provided, no line will be added.
`point`	A list of arguments to pass to `qqplotr::stat_qq_point()` or `qqplotr::stat_pp_point()`, depending on the value of `type`. Default is `list()`, which means to add points with default arguments. If `NULL` is provided, no points will be added (not recommended).
`fill_name`	A character string to name the legend of fill. Default is "Band Type".
`band_alpha`	A numeric value to set the alpha of all bands. Default is 0.5. It is a shortcut for setting alpha of all bands. You can override it by setting `alpha` in `band` argument. For example, `band = list(list(alpha = 0.3), list(alpha = 0.7))`.
`theme`	A character string or a theme class (i.e. ggplot2::theme_classic) specifying the theme to use. Default is "theme_this".
`theme_args`	A list of arguments to pass to the theme function.
`palette`	A character string specifying the palette to use. A named list or vector can be used to specify the palettes for different `split_by` values.
`palcolor`	A character string specifying the color to use in the palette. A named list can be used to specify the colors for different `split_by` values. If some values are missing, the values from the palette will be used (palcolor will be NULL for those values).
`facet_by`	A character string specifying the column name of the data frame to facet the plot. Otherwise, the data will be split by `split_by` and generate multiple plots and combine them into one using `patchwork::wrap_plots`
`facet_scales`	Whether to scale the axes of facets. Default is "fixed" Other options are "free", "free_x", "free_y". See `ggplot2::facet_wrap`
`facet_ncol`	A numeric value specifying the number of columns in the facet. When facet_by is a single column and facet_wrap is used.
`facet_nrow`	A numeric value specifying the number of rows in the facet. When facet_by is a single column and facet_wrap is used.
`facet_byrow`	A logical value indicating whether to fill the plots by row. Default is TRUE.
`aspect.ratio`	A numeric value specifying the aspect ratio of the plot.
`legend.position`	A character string specifying the position of the legend. if `waiver()`, for single groups, the legend will be "none", otherwise "right".
`legend.direction`	A character string specifying the direction of the legend.
`title`	A character string specifying the title of the plot. A function can be used to generate the title based on the default title. This is useful when split_by is used and the title needs to be dynamic.
`subtitle`	A character string specifying the subtitle of the plot.
`seed`	A numeric value to set the seed for random number generation. Default is 8525.
`xlim`	A numeric vector of length 2 to set the x-axis limits.
`ylim`	A numeric vector of length 2 to set the y-axis limits.
`xlab`	A character string specifying the x-axis label.
`ylab`	A character string specifying the y-axis label.
`...`	Additional arguments.