EnrichNetworkAtomic: Atomic Enrichment Network

In plotthis: High-Level Plotting Built Upon 'ggplot2' and Other Plotting Packages

Atomic Enrichment Network

Description

Atomic Enrichment Network

Usage

EnrichNetworkAtomic(
  data,
  top_term = 6,
  metric = "p.adjust",
  character_width = 50,
  layout = "fr",
  layoutadjust = TRUE,
  adjscale = 60,
  adjiter = 100,
  blendmode = "blend",
  labelsize = 5,
  theme = "theme_this",
  theme_args = list(),
  palette = "Paired",
  palcolor = NULL,
  alpha = 1,
  aspect.ratio = 1,
  legend.position = "right",
  legend.direction = "vertical",
  title = NULL,
  subtitle = NULL,
  xlab = NULL,
  ylab = NULL,
  seed = 8525,
  ...
)

Arguments

data	A data frame containing the data to be plotted.
layoutadjust	A logical value specifying whether to adjust the layout of the network.
adjscale	A numeric value specifying the scale of the adjustment.
adjiter	A numeric value specifying the number of iterations for the adjustment.
blendmode	A character string specifying the blend mode of the colors. Either "blend", "average", "multiply" and "screen".
theme	A character string or a theme class (i.e. ggplot2::theme_classic) specifying the theme to use. Default is "theme_this".
theme_args	A list of arguments to pass to the theme function.
palette	A character string specifying the palette to use. A named list or vector can be used to specify the palettes for different split_by values.
palcolor	A character string specifying the color to use in the palette. A named list can be used to specify the colors for different split_by values. If some values are missing, the values from the palette will be used (palcolor will be NULL for those values).
alpha	A numeric value specifying the transparency of the plot.
aspect.ratio	A numeric value specifying the aspect ratio of the plot.
legend.position	A character string specifying the position of the legend. if waiver(), for single groups, the legend will be "none", otherwise "right".
legend.direction	A character string specifying the direction of the legend.
title	A character string specifying the title of the plot. A function can be used to generate the title based on the default title. This is useful when split_by is used and the title needs to be dynamic.
subtitle	A character string specifying the subtitle of the plot.
xlab	A character string specifying the x-axis label.
ylab	A character string specifying the y-axis label.
seed	The random seed to use. Default is 8525.
...	Additional arguments.

Value

A ggplot object

plotthis documentation built on April 11, 2025, 5:45 p.m.