group_comparison_anova: Group comparisons for the anova test

In pmartR: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data

Group comparisons for the anova test

Description

Takes the results of anova_test() and returns group comparison p-values

Usage

group_comparison_anova(
  data,
  groupData,
  comparisons,
  Xfull,
  Xred,
  anova_results_full,
  beta_to_mu_full,
  beta_to_mu_red
)

Arguments

data	The expression values without the id column
groupData	data frame that assigns sample names to groups
comparisons	dataframe that defines the comparsions of interest
Xfull	design matrix for the full model with interaction terms between the main effects
Xred	design matrix for the reduced model with no interaction terms between the main effects
anova_results_full	results of the pmartR::anova_test() function
beta_to_mu_full	matrix that maps the beta coefficients to the group means for the full model
beta_to_mu_red	matrix that maps the beta coefficients to the group means for the reduced model

Value

A data.frame containing the p-values from the group comparisons.

Author(s)

Bryan Stanfill, Daniel Claborne

pmartR documentation built on Oct. 15, 2024, 1:06 a.m.