estimate_GIC: Estimate the Genotypic Information Coefficient (GIC)
In polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
View source: R/polyqtlR_functions.R
estimate_GIC R Documentation
Estimate the Genotypic Information Coefficient (GIC)
Description
Function to estimate the GIC per homologue using IBD probabilities
Usage
estimate_GIC(IBD_list)
Arguments
IBD_list
List of IBD probabilities
Value
A nested list; each list element (per linkage group) contains the following items:
- GIC :
Matrix of GIC values estimated from the IBD probabilities
- map :
Integrated linkage map positions of markers used in IBD calculation
- parental_phase :
The parental marker phasing, coded in 1 and 0's
Examples
data("IBD_4x")
GIC_4x <- estimate_GIC(IBD_list = IBD_4x)
polyqtlR documentation built on May 29, 2024, 7:16 a.m.
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View source: R/polyqtlR_functions.R
| estimate_GIC | R Documentation |
Estimate the Genotypic Information Coefficient (GIC)
Description
Function to estimate the GIC per homologue using IBD probabilities
Usage
estimate_GIC(IBD_list)
Arguments
IBD_list |
List of IBD probabilities |
Value
A nested list; each list element (per linkage group) contains the following items:
- GIC :
Matrix of GIC values estimated from the IBD probabilities
- map :
Integrated linkage map positions of markers used in IBD calculation
- parental_phase :
The parental marker phasing, coded in 1 and 0's
Examples
data("IBD_4x")
GIC_4x <- estimate_GIC(IBD_list = IBD_4x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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