estimate_GIC: Estimate the Genotypic Information Coefficient (GIC)
In polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Description
Usage
Arguments
Value
Examples
View source: R/polyqtlR_functions.R
Description
Function to estimate the GIC per homologue using IBD probabilities
Usage
1
estimate_GIC(IBD_list)
Arguments
IBD_list
List of IBD probabilities
Value
A nested list; each list element (per linkage group) contains the following items:
GIC : Matrix of GIC values estimated from the IBD probabilities
map : Integrated linkage map positions of markers used in IBD calculation
parental_phase : The parental marker phasing, coded in 1 and 0's
Examples
1
2
data("IBD_4x")
GIC_4x <- estimate_GIC(IBD_list = IBD_4x)
polyqtlR documentation built on Feb. 2, 2022, 5:09 p.m.
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Description Usage Arguments Value Examples
View source: R/polyqtlR_functions.R
Description
Function to estimate the GIC per homologue using IBD probabilities
Usage
1 | estimate_GIC(IBD_list)
|
Arguments
IBD_list |
List of IBD probabilities |
Value
A nested list; each list element (per linkage group) contains the following items:
GIC : Matrix of GIC values estimated from the IBD probabilities
map : Integrated linkage map positions of markers used in IBD calculation
parental_phase : The parental marker phasing, coded in 1 and 0's
Examples
1 2 | data("IBD_4x")
GIC_4x <- estimate_GIC(IBD_list = IBD_4x)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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