visualiseGIC: Visualise Genotypic Information Coefficient

In polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations

Visualise Genotypic Information Coefficient

Description

Function to visualise the GIC of a certain region

Usage

visualiseGIC(
  GIC_list,
  add_rug = TRUE,
  add_leg = FALSE,
  ylimits = NULL,
  gic.cex = 1,
  show_markers = TRUE,
  add.mainTitle = TRUE,
  plot.cols = NULL
)

Arguments

GIC_list	List of GIC data, the output of estimate_GIC
add_rug	Should original marker positions be added to the plot?
add_leg	Should a legend be added to the plot?
ylimits	Optional argument to control the plotting area, by default NULL
gic.cex	Option to increase the size of the GIC
show_markers	Should markers be shown?
add.mainTitle	Should a main title be added to the plot?
plot.cols	Optional argument to specify plot colours, otherwise suitable contrasting colours are chosen

Value

The phased map data for the specified region, recoded into 1's and 0's.

Examples

data("GIC_4x")
visualiseGIC(GIC_list = GIC_4x)

polyqtlR documentation built on May 29, 2024, 7:16 a.m.