GST: Nei's GST

In pooledpeaks: Genetic Analysis of Pooled Samples

Nei's GST

Description

This function calculates GST (Nei's standard genetic distance) measure from a gene identity matrix.

Usage

GST(J = matrix, pairwise = TRUE)

Arguments

J	A square matrix representing a gene identity matrix.
pairwise	Logical indicating whether to calculate pairwise GST. If set to FALSE, must not contain any missing data.

Value

If pairwise = TRUE, returns a matrix of pairwise GST values. If pairwise = FALSE, returns the overall GST value.

Examples

gene_identity_matrix <- matrix(c(
0.3164550, 0.2836333, 0.2760485,
0.2836333, 0.3106084, 0.2867215,
0.2760485, 0.2867215, 0.3338663
), nrow = 3, byrow = TRUE,
dimnames = list(paste0("Sample", 1:3), paste0("Sample", 1:3)))

GST(J=gene_identity_matrix, pairwise=TRUE)
GST(J=gene_identity_matrix, pairwise=FALSE)

pooledpeaks documentation built on April 3, 2025, 10:53 p.m.