Rep_check: Replicate Check for Duplicate Samples

In pooledpeaks: Genetic Analysis of Pooled Samples

Replicate Check for Duplicate Samples

Description

This function checks for duplicate samples in the input data frame and calculates the average peak heights for each sample. If the Jost's D between duplicate samples exceeds 0.05, it flags those samples.

Usage

Rep_check(df)

Arguments

df	The input data frame containing peak heights for each sample.

Value

A data frame containing the average peak heights for each sample, with flagged samples where duplicates have a Jost's D exceeding 0.05.

Examples

marker_data <- data.frame(
Sample.1a = c(400, 600, 700),
Sample.1b = c(420, 606, 710),
Sample.2a = c(450, 550, 480),
Sample.2b = c(500, 540, 480),
Sample.3a = c(300, 200, 500),
Sample.3b = c(290, 100, 400),
row.names=c(185,188,191)
)

Rep_check(marker_data)

pooledpeaks documentation built on April 3, 2025, 10:53 p.m.