TypedLoci: Typed Loci

In pooledpeaks: Genetic Analysis of Pooled Samples

Typed Loci

Description

This function calculates the number of loci successfully genotyped by each individual included in our data set

Usage

TypedLoci(datafile = data.frame)

Arguments

datafile

A data frame containing the input data must be in LoadData style LoadData.

Value

A matrix representing processed data.

Examples

genetic_data <- data.frame(
Locus = c(1, 1, 1, 1, 1, 2, 2, 2, 2, 2),
Locus_allele = c("Marker1", "n", 1, 2, 3, "Marker2", "n", 1, 2, 3),
Sample1 = c(NA, 10, 0.5, 0.5, 0, NA, 10, 0.2, 0.3, 0.5),
Sample2 = c(NA, 20, 0.1, 0.2, 0.7, NA, 20, 0.3, 0.4, 0.3),
Sample3 = c(NA, 30, 0.3, 0.4, 0.3, NA, 30, 0.4, 0.2, 0.4)
)
TypedLoci(datafile=genetic_data)

pooledpeaks documentation built on April 3, 2025, 10:53 p.m.