R/powerHaDeX-package.R

In powerHaDeX: Efficient Simulation of HDX-MS Data and Tools for the Statistical Analysis

#' powerHaDeX
#'
#' @description The R-package powerHaDeX for simulating and analyzing data
#' coming from HDX-MS experiments along with the possibility of comparing the
#' power of the tests verifying differences in deuteration levels.
#'
#' @import data.table
#' @importFrom stats AIC aggregate anova dbinom lm
#' logLik pt rnorm sd weighted.mean coefficients
#' @importFrom nlme corCompSymm corAR1
#' @importFrom expm %^%
#' @importFrom Rcpp sourceCpp
#' @importFrom utils combn setTxtProgressBar txtProgressBar
#' @importFrom ggplot2 ggplot aes geom_segment ylab xlab theme_minimal theme
#' element_text ggtitle facet_wrap
#' @importFrom stats qt
#' @importFrom glmnet glmnet
#' @importFrom checkmate assert checkLogical checkChoice checkFALSE
#' @author Michal Burdukiewicz, Krystyna Grzesiak, Mateusz Staniak
#' @docType package
#' @name powerHaDeX


if(getRversion() >= "2.15.1")
    utils::globalVariables(c("Test", "State_1", "State_2", "State", "Sequence",
                             "Significant_difference", "Center", "z", "PF",
                             "exp_mass", "Inten", "Experimental_state", "File",
                             "Exposure", "avg_exp_mass", "Rep", "Mass", "Mz",
                             "err_avg_mass", "err_deut_uptake", "deut_uptake",
                             "Transformation", "Num_replicates", "Num_states",
                             "Num_timepoints", "Time", "Intensity", "Charge"))