Description Usage Arguments Details Value Note Author(s) References See Also Examples

View source: R/power_VSMc_cox.R

Calculate sample size for testing mediation effect in cox regression based on Vittinghoff, Sen and McCulloch's (2009) method.

1 2 3 4 5 6 7 8 9 | ```
ssMediation.VSMc.cox(power,
b2,
sigma.m,
psi,
corr.xm,
n.lower = 1,
n.upper = 1e+30,
alpha = 0.05,
verbose=TRUE)
``` |

`power` |
power for testing |

`b2` |
regression coefficient for the mediator |

`sigma.m` |
standard deviation of the mediator. |

`psi` |
the probability that an observation is uncensored, so that
the number of event |

`corr.xm` |
correlation between the predictor |

`n.lower` |
lower bound for the sample size. |

`n.upper` |
upper bound for the sample size. |

`alpha` |
type I error rate. |

`verbose` |
logical. |

The test is for testing the null hypothesis *b_2=0*
versus the alternative hypothesis *b_2\neq 0*
for the cox regressions:

*
\log(λ)=\log(λ_0)+b1 x_i + b2 m_i
*

Vittinghoff et al. (2009) showed that for the above cox regression, testing the mediation effect
is equivalent to testing the null hypothesis *H_0: b_2=0*
versus the alternative hypothesis *H_a: b_2\neq 0*.

The full model is

*
\log(λ)=\log(λ_0)+b_1 x_i + b_2 m_i
*

The reduced model is

*
\log(λ)=\log(λ_0)+b_1 x_i
*

Vittinghoff et al. (2009) mentioned that if confounders need to be included
in both the full and reduced models, the sample size/power calculation formula
could be accommodated by redefining `corr.xm`

as the multiple
correlation of the mediator with the confounders as well as the predictor.

`n ` |
sample size. |

`res.uniroot ` |
results of optimization to find the optimal sample size. |

The test is a two-sided test. For one-sided tests, please double the
significance level. For example, you can set `alpha=0.10`

to obtain one-sided test at 5% significance level.

Weiliang Qiu [email protected]

Vittinghoff, E. and Sen, S. and McCulloch, C.E..
Sample size calculations for evaluating mediation.
*Statistics In Medicine*. 2009;28:541-557.

`minEffect.VSMc.cox`

,
`powerMediation.VSMc.cox`

1 2 3 4 5 | ```
# example in section 6 (page 547) of Vittinghoff et al. (2009).
# n = 1399
ssMediation.VSMc.cox(power = 0.7999916, b2 = log(1.5),
sigma.m = sqrt(0.25 * (1 - 0.25)), psi = 0.2, corr.xm = 0.3,
alpha = 0.05, verbose = TRUE)
``` |

powerMediation documentation built on Feb. 9, 2018, 6:10 a.m.

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