boundary_matrix: Boundary matrix

In prioritizr: Systematic Conservation Prioritization in R

Boundary matrix

Description

Generate a matrix describing the amount of shared boundary length between different planning units, and the total amount of boundary length for each planning unit.

Usage

boundary_matrix(x, ...)

## S3 method for class 'Raster'
boundary_matrix(x, ...)

## S3 method for class 'SpatRaster'
boundary_matrix(x, ...)

## S3 method for class 'SpatialPolygons'
boundary_matrix(x, ...)

## S3 method for class 'SpatialLines'
boundary_matrix(x, ...)

## S3 method for class 'SpatialPoints'
boundary_matrix(x, ...)

## S3 method for class 'sf'
boundary_matrix(x, ...)

## Default S3 method:
boundary_matrix(x, ...)

Arguments

x	terra::rast() or sf::sf() object representing planning units.
...	not used.

Details

This function assumes the data are in a coordinate system where Euclidean distances accurately describe the proximity between two points on the earth. Thus spatial data in a longitude/latitude coordinate system (i.e., WGS84) should be reprojected to another coordinate system before using this function. Note that for terra::rast() objects boundaries are missing for cells that have missing (NA) values in all cells.

Value

A dsCMatrix symmetric sparse matrix object. Each row and column represents a planning unit. Cell values indicate the shared boundary length between different pairs of planning units. Values along the matrix diagonal indicate the total perimeter associated with each planning unit.

Notes

In earlier versions, this function had an extra str_tree parameter that could be used to leverage STR query trees to speed up processing for planning units in vector format. Although this functionality improved performance, it was not enabled by default because the underlying function (i.e., rgeos:gUnarySTRtreeQuery()) was documented as experimental. The boundary_matrix() function has since been updated so that it will use STR query trees to speed up processing for planning units in vector format (using terra::sharedPaths()).

Also, note that in previous versions, cell values along the matrix diagonal indicated the perimeter associated with planning units that did not contain any neighbors. This has now changed such that values along the diagonal now correspond to the total perimeter associated with each planning unit.

See Also

Boundary matrix data might need rescaling to improve optimization performance, see rescale_matrix() to perform these calculations.

Examples

## Not run: 
# load data
sim_pu_raster <- get_sim_pu_raster()
sim_pu_polygons <- get_sim_pu_polygons()

# subset data to reduce processing time
r <- terra::crop(sim_pu_raster, c(0, 0.3, 0, 0.3))
ply <- sim_pu_polygons[c(1:3, 11:13, 20:22), ]

# create boundary matrix using raster data
bm_raster <- boundary_matrix(r)

# create boundary matrix using polygon data
bm_ply <- boundary_matrix(ply)

# plot raster and boundary matrix
plot(r, main = "raster", axes = FALSE)
Matrix::image(bm_raster, main = "boundary matrix")

# plot polygons and boundary matrices
plot(ply[, 1], main = "polygons", axes = FALSE)
Matrix::image(bm_ply, main = "boundary matrix")

## End(Not run)

prioritizr documentation built on Aug. 9, 2023, 1:06 a.m.