Nothing
context("Setup")
test_that("Setup works", {
old_home <- Sys.getenv("HOME")
old_ppath <- Sys.getenv("PROJECTS_FOLDER_PATH")
temp_dir <- tempfile("dir")
dir.create(temp_dir)
Sys.setenv(HOME = temp_dir)
Sys.unsetenv("PROJECTS_FOLDER_PATH")
expect_equal(
fs::path_tidy(setup_projects(temp_dir)),
fs::path_tidy(fs::path(temp_dir, "projects"))
)
expect_message(
setup_projects(temp_dir, folder_name = "projects2"),
"\nThe environment variable PROJECTS_FOLDER_PATH indicates"
)
expect_equal(
sort(fs::dir_ls(projects_folder(), all = TRUE, recurse = TRUE)),
sort(
fs::path(
projects_folder(),
c(
".metadata",
".metadata/affiliations.rds",
".metadata/author_affiliation_assoc.rds",
".metadata/authors.rds",
".metadata/project_author_assoc.rds",
".metadata/projects.rds",
".templates",
".templates/CONSORT_protocol.Rmd",
".templates/STROBE_protocol.Rmd",
".templates/default_folder",
".templates/default_folder/data",
".templates/default_folder/data_raw",
".templates/default_folder/figures",
".templates/default_folder/manuscript",
".templates/default_folder/pXXXX.Rproj",
".templates/default_folder/progs",
".templates/default_folder/progs/01_protocol.Rmd",
".templates/default_folder/progs/02_datawork.Rmd",
".templates/default_folder/progs/03_analysis.Rmd",
".templates/default_folder/progs/04_report.Rmd",
".templates/default_folder/progs/citations.bib",
".templates/default_folder/progs/style.css",
".templates/default_folder/progs/styles.docx"
)
)
)
)
expect_error(
new_affiliation(
department_name = "Math Dept.",
institution_name = "Springfield College",
address = "123 College St, Springfield, AB"
),
NA
)
expect_error(
new_affiliation(
department_name = "Art Department",
institution_name = "Springfield College",
address = "321 University Boulevard, Springfield, AB",
id = 42
),
NA
)
expect_error(
edit_affiliation("Math Dept", department_name = "Mathematics Department"),
NA
)
expect_error(
new_author(
given_names = "Rosetta",
last_name = "Stone",
affiliations = c(42, "Math"),
degree = "PhD",
email = "slab@rock.net",
phone = "867-555-5309",
id = 8888
),
NA
)
expect_error(
new_author(id = 8888, given_names = "Johhhhhn")
)
expect_error(
new_author(
given_names = "Spiro",
last_name = "Agnew",
degree = "LLB",
affiliations = "Art D",
id = 13
),
NA
)
expect_error(
new_author(given_names = "Plato", id = 303),
NA
)
expect_error(
edit_author(
author = 303,
given_names = NA,
last_name = "Plato",
title = "Nut"
),
NA
)
expect_error(
edit_author("Spiro", affiliations = ~ -"Art D" + Math),
NA
)
expect_error(
new_project(
title = "Understanding the Construction of the United States",
short_title = "USA",
authors = c(13, "Stone"),
stage = 4,
deadline = "2055-02-28",
deadline_type = "submission",
parent_directory = "famous_studied/philosophers/rocks",
corresp_auth = "Stone",
current_owner = "agnew",
make_directories = TRUE,
status = "waiting on IRB"
),
NA
)
expect_error(
edit_project(
"Understanding",
short_title = "usa1",
authors = ~ + "303" - Stone,
corresp_auth = "plato"
),
NA
)
expect_error(
new_idea(title = "Boiling the Ocean"),
NA
)
expect_identical(
affiliations(),
tibble::tribble(
~id, ~department_name, ~institution_name, ~address,
1L, "Mathematics Department", "Springfield College", "123 College St, Springfield, AB",
42L, "Art Department", "Springfield College", "321 University Boulevard, Springfield, AB"
) %>% structure(class = c("projects_metadata_tbl", class(.)))
)
expect_identical(
authors(),
tibble::tribble(
~id, ~last_name, ~given_names, ~title, ~degree, ~email, ~phone,
13L, "Agnew", "Spiro", NA, "LLB", NA, NA,
303L, "Plato", NA, "Nut", NA, NA, NA,
8888L, "Stone", "Rosetta", NA, "PhD", "slab@rock.net", "867-555-5309"
) %>% structure(class = c("projects_metadata_tbl", class(.)))
)
expect_identical(
projects(verbose = TRUE, all_stages = TRUE),
tibble::tibble(
id = 1L:2L,
title = c("Understanding the Construction of the United States",
"Boiling the Ocean"),
short_title = c("usa1", NA),
current_owner = new_projects_author(c("13: Agnew", NA)),
status = c("waiting on IRB", "just an idea"),
deadline_type = c("submission", NA),
deadline = lubridate::as_datetime(c("2055-02-28", NA)),
stage = new_projects_stage(c("4: manuscript", "0: idea")),
path = unclass(c(fs::path(projects_folder(),
"famous_studied/philosophers/rocks/p0001"),
fs::path(projects_folder(), "p0002"))),
corresp_auth = new_projects_author(c("303: Plato", NA)),
creator = new_projects_author(rep(paste0("0: ", Sys.info()["user"]), 2L))
) %>% structure(class = c("projects_metadata_tbl", class(.)))
)
expect_identical(
get_rds(make_rds_path("project_author_assoc")),
tibble::tibble(id1 = c(1L, 1L), id2 = c(13L, 303L))
)
expect_identical(
get_rds(make_rds_path("author_affiliation_assoc")),
tibble::tibble(id1 = c(8888L, 8888L, 13L), id2 = c(42L, 1L, 1L))
)
Sys.setenv(HOME = old_home, PROJECTS_FOLDER_PATH = old_ppath)
})
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