Man pages for protiq
Protein (identification and) quantification based on peptide evidence
| checkInputData | Generic function to check if the input data fulfills all... |
| checkInputData.scampi | Check if input object fulfills all requirements in order to... |
| estimateModelParameters | Estimate the SCAMPI model paramteres alpha, beta, mu and tau... |
| getCovU | Compute covariance matrix of peptide abundances |
| iterateScampi | SCAMPI protein quantification function with iterative outlier... |
| leptoSRM | SRM quantification example data |
| leptoSRMedgespp | SRM quantification: edges informationu. |
| leptoSRMpeptides | SRM quantification: peptide example data |
| leptoSRMproteins | SRM quantification: protein example data |
| preprocessInputData | Generic function to preprocess the input data for protein... |
| preprocessInputData.scampi | Precompute all quantities which will be used (repetitously)... |
| protiq-package | Protein (identification and) quantification based on peptide... |
| quantifyPeptide | Compute expected value for the peptide abundance. |
| quantifyProtein | Compute expected value and variance of a protein abundance. |
| quantifyProteins | Compute the protein (and optionally the peptide) abundance... |
| runScampi | SCAMPI protein quantification function |
| scampi-class | Class '"scampi"' |
| scampiVal-class | Class '"scampiVal"' |
