preprocessInputData: Generic function to preprocess the input data for protein...

In protiq: Protein (identification and) quantification based on peptide evidence

Description

Quantities which do not depend on the parameter values are precomputed and stored to be accessed quickly in further computations.

Usage

preprocessInputData(scampiData, ...)

Arguments

scampiData	object of class scampi or mipgem
...	further arguments to be passed to the methods

Details

Currently only the functions for quantification, related to objects of the class scampi, are available.

Author(s)

Sarah Gerster [e-mail]

See Also

preprocessInputData.scampi for details about the preprocessing performed on scampi objects

Examples

data("leptoSRM")
dataChecked <- checkInputData(scampi(peptides=leptoSRMpeptides, 
                                     proteins=leptoSRMproteins, 
                                     edgespp=leptoSRMedgespp),
                              rescaling=FALSE)
dataPrepro <- preprocessInputData(dataChecked)

protiq documentation built on May 2, 2019, 9:06 a.m.