protiq-package: Protein (identification and) quantification based on peptide...
In protiq: Protein (identification and) quantification based on peptide evidence

Description Details Author(s) References See Also

Method for protein quantification based on identified and quantified peptides. protiq can be used for absolute and relative protein quantification. Input peptide abundance scores can come from various sources, including SRM transition areas and intentisites or spectral counts derived from shotgun experiments. The package is being extended to also include the model for protein identification, MIPGEM, presented in Gerster et al., see references.

Package:	protiq
Type:	Package
Version:	1.0
Date:	2012-09-30
License:	GPL (>= 2)
Depends:	methods
Imports:	graph, RBGL, mvtnorm

Sarah Gerster (maintainer) sarah.gerster@isb-sib.ch Peter Buehlmann

Gerster, S., Qeli, E., Ahrens, C.H. and Buehlmann, P. (2010). Protein and gene model inference based on statistical modeling in k-partite graphs. Proceedings of the National Academy of Sciences 107(27):12101-12106.

Main functions: runScampi, iterateScampi

protiq documentation built on May 2, 2019, 9:06 a.m.