API for protiq
Protein (identification and) quantification based on peptide evidence

Global functions
buildBipartiteGraph Source code
checkInputData Man page Source code
checkInputData.scampi Man page Source code
estimateLSEparam Source code
estimateMLEparam Source code
estimateModelParameters Man page Source code
getBetaContribLSE Source code
getCCnlL Source code
getCovU Man page Source code
getDmat Source code
getMyCCNr Source code
getMyNeighborhoodSize Source code
getMyPeptides Source code
getMyProteins Source code
getProtId Source code
getSampleCov Source code
getTauContribLSE Source code
getTopNScore Source code
isInCC Source code
iterateScampi Man page Source code
leptoSRM Man page
leptoSRMedgespp Man page
leptoSRMpeptides Man page
leptoSRMproteins Man page
nlLtoMinimize Source code
plot,scampi,missing-method Man page
plot,scampiVal,missing-method Man page
plot.scampi Source code
plot.scampiVal Source code
plotCC Source code
preprocessCC Source code
preprocessInputData Man page Source code
preprocessInputData.scampi Man page Source code
protiq Man page
protiq-package Man page
quantifyPeptide Man page Source code
quantifyProtein Man page Source code
quantifyProteins Man page Source code
replacePepNumbers Source code
replaceProtNumbers Source code
runScampi Man page Source code
sampleInitialVector Source code
scampi Man page Source code
scampi-class Man page
scampiVal Man page Source code
scampiVal-class Man page
show,scampi-method Man page
show,scampiVal-method Man page
show.scampi Source code
show.scampiVal Source code
summary,scampi-method Man page
summary,scampiVal-method Man page
summary.scampi Source code
summary.scampiVal Source code
protiq documentation built on May 2, 2019, 9:06 a.m.