hmeto: Human MetO sites oxidized by hydrogen peroxide treatment.

Description Usage Format Source

Description

A dataset containing data regarding human MetO sites oxidized by H2O2.

Usage

1

Format

A data frame with 4472 rows and 15 variables:

prot_id

UniProt ID of the oxidized protein

prot_name

the protein's name

met_pos

the position of the MetO site in the primary structure

met_vivo_vitro

conditions under which the oxidation experiment was carried out

MetOsites

array with all the sites oxidized in that protein

site_id

primary key identifying the site

positive

sequence environment of the MetO site

control

sequence environment of a non oxidized Met from the same protein

IDP

Intrinsically Disordered Proteins, 0: the protein is not found in DisProt; 1: the protein contains disordered regions; 2: the protein may contain disordered regions but the experimental evidences are ambiguous

IDR

Intrinsically Disordered Region, TRUE: the MetO site belong to the IDR, FALSE: the MetO site doesn't belong to the IDR

abundance

protein abundance, in ppm

N

protein length, in number of residues

met

number of methionine residues

fmet

relative frequency of Met in that protein

prot_vivo_vitro

whether the protein has been described to be oxidized in vivo, in vitro or under both conditions

Source

https://metosite.uma.es/


ptm documentation built on May 24, 2021, 9:06 a.m.

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