hmeto: Human MetO sites oxidized by hydrogen peroxide treatment.
In ptm: Analyses of Protein Post-Translational Modifications

hmeto

R Documentation

Human MetO sites oxidized by hydrogen peroxide treatment.

A dataset containing data regarding human MetO sites oxidized by H2O2.

hmeto

A data frame with 4472 rows and 15 variables:

prot_id: UniProt ID of the oxidized protein
prot_name: the protein's name
met_pos: the position of the MetO site in the primary structure
met_vivo_vitro: conditions under which the oxidation experiment was carried out
MetOsites: array with all the sites oxidized in that protein
site_id: primary key identifying the site
positive: sequence environment of the MetO site
control: sequence environment of a non oxidized Met from the same protein
IDP: Intrinsically Disordered Proteins, 0: the protein is not found in DisProt; 1: the protein contains disordered regions; 2: the protein may contain disordered regions but the experimental evidences are ambiguous
IDR: Intrinsically Disordered Region, TRUE: the MetO site belong to the IDR, FALSE: the MetO site doesn't belong to the IDR
abundance: protein abundance, in ppm
N: protein length, in number of residues
met: number of methionine residues
fmet: relative frequency of Met in that protein
prot_vivo_vitro: whether the protein has been described to be oxidized in vivo, in vitro or under both conditions