Man pages for pvEBayes
Empirical Bayes Methods for Pharmacovigilance
| AIC.pvEBayes | Obtain Akaike Information Criterion (AIC) for a pvEBayes... |
| BIC.pvEBayes | Obtain Bayesian Information Criterion (BIC) for a pvEBayes... |
| calculate_tilde_e | Estimate expected null baseline count based on reference row... |
| dot-E_fit | Fit an Efron model for a contingency table. |
| dot-KM_fit | Fit a Koenker-Mizera (KM) model for a contingency table. |
| dot-NBmix_EM | Fit gamma mixture based empirical Bayes models using ECM... |
| estimate_null_expected_count | Estimate expected null baseline count based on reference row... |
| extract_all_fitted_models | Extract all fitted models from a tuned pvEBayes Object |
| eyeplot_pvEBayes | Generate an eyeplot showing the distribution of posterior... |
| faers_opioid_mental | FDA opioid dataset with 243 mental-related adverse events |
| gbca2025 | FDA GBCA dataset with 1328 adverse events |
| gbca2025_69 | FDA GBCA dataset with 69 adverse events |
| generate_contin_table | Generate random contingency tables based on a reference table... |
| get_posterior_prob | Obtain posterior probability of being a signal |
| heatmap_pvEBayes | Generate a heatmap plot visualizing posterior probabilities... |
| logLik.pvEBayes | Extract log marginal likelihood for a pvEBayes object |
| pipe | Pipe operator |
| plot.pvEBayes | Plotting method for a pvEBayes object |
| posterior_draws | Generate posterior draws for each AE-drug combination |
| print.pvEBayes | Print method for a pvEBayes object |
| pvEBayes | Fit a general-gamma, GPS, K-gamma, KM or efron model for a... |
| pvEBayes-package | A suite of empirical Bayes methods to use in... |
| pvEBayes_tune | Select hyperparameter and obtain the optimal general-gamma or... |
| statin2025 | FDA statin dataset with 5119 adverse events |
| statin2025_44 | FDA statin dataset with 44 adverse events |
| statin42 | FDA statin dataset with 42 adverse events |
| summary.pvEBayes | Summary method for a pvEBayes object |
| summary_table_pvEBayes | Obtain a summary table for a pvEBayes object |
| tuning_efron | Select hyperparameter (p, c0) and obtain the optimal efron... |
| tuning_general_gamma | Select hyperparameter alpha and obtain the optimal... |
| vigi_opioid_mental | VigiBase opioid dataset with 100 mental-related adverse... |
