Nothing
context("genoprob_to_alleleprob_fst")
test_that("genoprob_to_alleleprob_fst works", {
library(qtl2)
# load data and create pseudomarker map
iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
gmap_w_pmar <- insert_pseudomarkers(iron$gmap, step=1)
probs <- calc_genoprob(iron, error_prob=0.002)
# create directory to hold results
fst_dir <- file.path(tempdir(), "iron_alleleprob")
while(dir.exists(fst_dir)) {
fst_dir <- paste0(fst_dir, sample(LETTERS, 1))
}
dir.create(fst_dir)
apr_fst <- genoprob_to_alleleprob_fst(probs, "iron", fst_dir, overwrite=TRUE)
# compare to direct calculation
apr <- genoprob_to_alleleprob(probs)
expect_equal(apr, fst_extract(apr_fst) )
# clean up
unlink(fst_dir, recursive=TRUE)
})
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