API for qtlnet
Causal Inference of QTL Networks
| Global functions | |
|---|---|
| M.2.lista | Source code |
| Pscdbp | Man page |
| Pscdbp.bic | Man page |
| Pscdbp.qtlnet | Man page |
| acyclic | Man page |
| acyclic.DG | Man page |
| acyclic.data | Man page |
| acyclic.qdg | Man page |
| acyclic.qtl | Man page |
| adjust.pheno | Source code |
| agree.covs | Source code |
| approximate.UDG | Source code |
| averaged.posterior.table | Source code |
| best.qtlnet | Man page Source code |
| bic.join | Man page Source code |
| bic.qtlnet | Man page Source code |
| c.qtlnet | Man page Source code |
| calc.bic | Source code |
| check.DG | Source code |
| check.downstream | Source code |
| check.qtlnet | Man page Source code |
| check.reversions | Source code |
| check.upstream | Source code |
| compute.mu | Source code |
| cov.formula | Source code |
| create.cov.matrix | Source code |
| cyclica | Man page |
| cyclica.data | Man page |
| cyclica.qtl | Man page |
| cyclicb | Man page |
| cyclicb.data | Man page |
| cyclicb.qtl | Man page |
| cyclicc | Man page |
| cyclicc.data | Man page |
| cyclicc.qtl | Man page |
| dist.qtlnet | Man page Source code |
| drop.edge | Source code |
| edgematch.qtlnet | Man page Source code |
| est.qtlnet | Man page Source code |
| find.bic | Source code |
| find.code | Source code |
| find.index.parent | Source code |
| find.parent.score | Source code |
| find.pheno.names | Source code |
| fold.M | Source code |
| forbidden.additions | Source code |
| generate.data | Source code |
| generate.data.2or3 | Source code |
| generate.data.graph.a | Source code |
| generate.data.graph.b | Source code |
| generate.data.graph.c | Source code |
| generate.qtl.markers | Man page Source code |
| generate.qtl.pheno | Man page Source code |
| geno.effect | Source code |
| get.all.solutions | Source code |
| get.averaged.net | Source code |
| get.cov.loglik | Source code |
| get.covariates | Source code |
| get.graph.edges | Source code |
| get.graph.vertices | Source code |
| get.model.average | Source code |
| get.parents | Source code |
| get.post.burnin | Source code |
| get.posterior.prob | Source code |
| get.ss | Source code |
| glxnet | Man page |
| glxnet.cross | Man page |
| glxnet.qdg | Man page |
| glxnet.qtl | Man page |
| graph.qdg | Man page Source code |
| graph.qtlnet | Man page Source code |
| group.qtlnet | Man page Source code |
| hk.design.matrix | Source code |
| igraph.qdg | Source code |
| igraph.qtlnet | Man page Source code |
| index.parents | Source code |
| init.qtlnet | Man page Source code |
| legacy.code | Source code |
| legacy.qtlnet | Source code |
| loci.qtlnet | Man page Source code |
| lod.score | Source code |
| log.likelihood | Source code |
| log.likelihood.s | Source code |
| make.saved.scores | Source code |
| match.parents | Source code |
| mcmc.qtlnet | Man page Source code |
| mds.qtlnet | Man page Source code |
| meanbic | Source code |
| model2M | Source code |
| nbhd.size | Source code |
| newfun | Source code |
| node.parents | Source code |
| order.as | Source code |
| orient.graph.edges | Source code |
| orient.graph.edges.cov | Source code |
| parallel.error | Source code |
| parallel.message | Source code |
| parallel.qtlnet | Man page Source code |
| parent.qtlnet | Source code |
| parents.qtlnet | Man page Source code |
| plot.qtlnet | Man page Source code |
| plotbic.qtlnet | Man page Source code |
| print.parent.qtlnet | Source code |
| print.parents.qtlnet | Source code |
| print.qdg | Man page Source code |
| print.qdg.perm.test | Man page Source code |
| print.qdg.sem | Man page Source code |
| print.qtlnet | Man page Source code |
| print.summary.qtlnet | Man page Source code |
| propose.add | Source code |
| propose.new.node.edge | Source code |
| propose.new.structure | Source code |
| pull.geno.argmax | Source code |
| pull.loci | Source code |
| pull.pheno.null | Source code |
| qdg | Man page Source code |
| qdg.perm.test | Man page Source code |
| qdg.sem | Man page Source code |
| qtlnet | Man page |
| qtlnet.phase1 | Source code |
| qtlnet.phase2 | Source code |
| qtlnet.phase3 | Source code |
| qtlnet.phase4 | Source code |
| qtlnet.phase5 | Source code |
| recheck.directions | Source code |
| renameUDG | Source code |
| rev.edge | Source code |
| reverse.proposal | Source code |
| s.formula | Source code |
| sample.exclude.down | Source code |
| scan.genome | Source code |
| scanone.summary | Source code |
| score.model | Source code |
| set.dat.form | Source code |
| shuffle.DG | Source code |
| size.qtlnet | Man page Source code |
| subset.qtlnet | Man page Source code |
| summary.parents.qtlnet | Man page Source code |
| summary.qdg | Man page Source code |
| summary.qdg.perm.test | Man page Source code |
| summary.qdg.sem | Man page Source code |
| summary.qtlnet | Man page Source code |
| threshold.net | Source code |
| transformPCtoUDG | Source code |
| update.node | Source code |
| write.qtlnet | Man page Source code |
| zero.M | Source code |
