Description Usage Arguments Details Value Author(s) References See Also Examples
Plot inferred causal network using igraph package.
1 2 3 4 5 | igraph.qtlnet(x, edges, loci.list,
pheno.color = "green", qtl.color = "red", vertex.color,
include.qtl = TRUE, ...)
## S3 method for class 'qtlnet'
plot(x, ...)
|
x |
Object of class |
edges |
Data frame with first two columns being |
loci.list |
List of character names of loci by phenotype. Typically determined by
call to |
pheno.color,qtl.color |
Name of color to use for phenotypes and QTLs, respectively. |
vertex.color |
Vertex colors in order of pheno-pheno edged augmented by
|
include.qtl |
Include QTL in graph if |
... |
Additional arguments passed to called routines. |
Uses the igraph package to create graph objects. These can be exported
to a variety of other modern graphics packages. graph.qtlnet
is
synonymous with igraph.qtlnet
.
Object of class graph
created using
graph.data.frame
.
Brian S. Yandell and Elias Chaibub Neto
Chaibub Neto E, Keller MP, Attie AD, Yandell BS (2010) Causal Graphical Models in Systems Genetics: a unified framework for joint inference of causal network and genetic architecture for correlated phenotypes. Ann Appl Statist 4: 320-339. http://www.stat.wisc.edu/~yandell/doc/2010/92.AnnApplStat.pdf
summary.qtlnet
,
loci.qtlnet
,
graph.data.frame
,
tkplot
1 2 3 4 5 6 | Pscdbp.graph <- igraph.qtlnet(Pscdbp.qtlnet)
Pscdbp.graph
## Not run:
tkplot(Pscdbp.graph)
## End(Not run)
|
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