Performs the Joint and Individual Variation Explained (JIVE) decomposition on a list of data sets when the data share a dimension, returning lowrank matrices that capture the joint and individual structure of the data [O'Connell, MJ and Lock, EF (2016) <doi:10.1093/bioinformatics/btw324>]. It provides two methods of rank selection when the rank is unknown, a permutation test and a Bayesian Information Criterion (BIC) selection algorithm. Also included in the package are three plotting functions for visualizing the variance attributed to each data source: a bar plot that shows the percentages of the variability attributable to joint and individual structure, a heatmap that shows the structure of the variability, and principal component plots.
Package details 


Author  Michael J. O'Connell [aut, cre], Eric F. Lock [aut], Adam Kaplan [ctb] 
Maintainer  Michael J. O'Connell <oconnemj@miamioh.edu> 
License  GPL3 
Version  2.4 
Package repository  View on CRAN 
Installation 
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