Creates a bar plot displaying the variance explained from a JIVE decomposition. Shows the percentage of variance attributed to each of joint structure, individual structure, and residual variance.
An object of class "jive".
A vector for the colors of the bars in the plot.
Michael J. O'Connell and Eric F. Lock
Lock, E. F., Hoadley, K. A., Marron, J. S., & Nobel, A. B. (2013). Joint and individual variation explained (JIVE) for integrated analysis of multiple data types. The Annals of Applied Statistics, 7(1), 523-542.
O'Connell, M. J., & Lock, E.F. (2016). R.JIVE for Exploration of Multi-Source Molecular Data. Bioinformatics advance access: 10.1093/bioinformatics/btw324.
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##Load JIVE results (using default settings) for simulated data ##as in Section 2.4 of Lock et al., 2013, ##with rank 1 joint structure, and rank 1 individual structure for each dataset data(SimResults) # Visualize results showVarExplained(Results) # showVarExplained is also called by the "jive" S3 class default plot method plot(Results)