m_style_cartoon: Specify Styling for Cartoon

In r3dmol: Create Interactive 3D Visualizations of Molecular Data

Description

Styling options for the cartoon representation. Used inside m_add_style() and m_set_style().

Usage

m_style_cartoon(
  color = NULL,
  style = "rectangle",
  ribbon = FALSE,
  arrows = TRUE,
  tubes = FALSE,
  thickness = 0.4,
  width = NULL,
  opacity = 1,
  colorfunc = NULL
)

Arguments

color	Block color values. Strand color, may specify as 'spectrum' which will apply reversed gradient based on residue number.
style	style of cartoon rendering ("trace", "oval", "rectangle" (default), "parabola", "edged").
ribbon	whether to use constant strand width, disregarding secondary structure; use thickness to adjust radius.
arrows	whether to add arrows showing beta-sheet directionality; does not apply to trace or ribbon.
tubes	whether to display alpha helices as simple cylinders; does not apply to trace.
thickness	cartoon strand thickness, default is 0.4.
width	cartoon strand width, default is secondary structure-dependent; does not apply to trace or ribbon.
opacity	set opacity from 0-1; transparency is set per-chain with a warning outputted in the event of ambiguity.
colorfunc	Allows the user to provide a function for setting the colorSchemes, written in javascript. Official Documentation

Examples

r3dmol() %>%
  m_add_model(data = pdb_1j72, format = "pdb") %>%
  m_set_style(style = m_style_cartoon(color = "spectrum")) %>%
  m_zoom_to()

r3dmol documentation built on March 14, 2021, 5:08 p.m.