m_fetch_pdb: Fetch Structure from PDB

In r3dmol: Create Interactive 3D Visualizations of Molecular Data

Description

Using specified pdb id, retrieved .pdb file using bio3d::get.pdb() function. Will always query the only PDB for structure, and not store on local drive. May take some time to fetch information, every time it is run.

Usage

m_fetch_pdb(pdb, save.pdb = FALSE, path = NULL)

Arguments

pdb	PDB ID string for structure.
save.pdb	Logical, whether or not to save the PDB to local drive. Will speed up subsequent load times. Defaults to FALSE
path	If save.pdb = TRUE, determines the location for file to be saved. Defaults to getwd().

Examples

library(r3dmol)
## Not run: 
r3dmol() %>%
  m_add_model(data = m_fetch_pdb("1bna")) %>%
  m_set_style(style = c(m_style_cartoon(), m_style_stick())) %>%
  m_zoom_to()

## End(Not run)

r3dmol documentation built on March 14, 2021, 5:08 p.m.