m_add_line: Add Lines Between Points

In r3dmol: Create Interactive 3D Visualizations of Molecular Data

Description

Add lines between the given points. Will match starting point/s with ending point/s to create a line between each point. Styling options can be supplied as one option, or a vector of length equal to the number of lines.

Usage

m_add_line(
  id,
  start,
  end,
  dashed = TRUE,
  color = "black",
  opacity = 1,
  hidden = FALSE
)

Arguments

id	R3dmol id or a r3dmol object (the output from r3dmol()).
start	Starting position (or list() of positions) of line. Can be a single position or list() of positions. Format either m_sel() or m_vector3().
end	Ending position (or list() of positions) of line. Can be a single position or list() of positions. Format either m_sel() or m_vector3().
dashed	Logical whether the lines are dashed.
color	Either single or list of color values equal to number of lines.
opacity	Either single or list of opacity values equal to number of lines.
hidden	Either single or list of hidden values equal to number of lines.

Value

R3dmol id or a r3dmol object (the output from r3dmol())

Examples

library(r3dmol)

r3dmol() %>%
  m_add_model(data = pdb_6zsl) %>%
  m_set_style(style = m_style_cartoon()) %>%
  m_zoom_to() %>%
  m_add_style(
    sel = m_sel(resi = 1:10),
    style = c(
      m_style_stick(),
      m_style_sphere(scale = 0.3)
    )
  ) %>%
  m_add_line(
    start = list(
      m_sel(resi = 1, chain = "A"),
      m_sel(resi = 1, chain = "A")
    ),
    end = list(
      m_sel(resi = 10, chain = "A"),
      m_sel(resi = 10, chain = "B")
    ),
    dashed = TRUE
  )

r3dmol documentation built on March 14, 2021, 5:08 p.m.