API for rEMM
Extensible Markov Model for Modelling Temporal Relationships Between Clusters

Global functions
.fade Source code
.find_medoids Source code
.get_parameters Source code
.installed Source code
.onLoad Source code
.simil_weight Source code
16S Man page
Alphaproteobacteria16S Man page
Derwent Man page
EMM Man page Source code
EMM-class Man page
EMMTraffic Man page
EMMsim Man page
EMMsim_sequence_test Man page
EMMsim_sequence_train Man page
EMMsim_test Man page
EMMsim_train Man page
Mollicutes16S Man page
SimpleMC Source code
StreamClustering-class Man page
TRAC Man page Source code
TRACDS Man page Source code
TRACDS-class Man page
as.graph Man page Source code
as.graph.TRACDS Man page Source code
as.igraph Man page Source code
as.igraph.TRACDS Man page Source code
build Man page
build,EMM,data.frame-method Man page Man page
build,EMM,matrix-method Man page Man page
build,EMM,numeric-method Man page Man page
c Man page
c,EMM-method Man page
cluster Man page
cluster,tNN,data.frame-method Man page
cluster,tNN,matrix-method Man page
cluster,tNN,numeric-method Man page
cluster_centers Man page
cluster_centers,tNN-method Man page
cluster_counts Man page
cluster_counts,tNN-method Man page
clusters Man page
clusters,tNN-method Man page
compact Man page
compact,TRACDS-method Man page
copy Man page
copy,EMM-method Man page
copy,TRACDS-method Man page
copy,tNN-method Man page
current_state Man page
current_state,TRACDS-method Man page
ellipsePoints Source code
fade Man page
fade,EMM,missing,missing-method Man page
fade,EMM,missing,numeric-method Man page
fade,EMM,numeric,missing-method Man page
fade,EMM,numeric,numeric-method Man page
fade,EMM,numeric-method Man page
find_clusters Man page
find_clusters,tNN,data.frame-method Man page
find_clusters,tNN,matrix-method Man page Man page
find_clusters,tNN,numeric-method Man page Man page
initial_transition Man page
initial_transition,TRACDS-method Man page Man page
last_clustering Man page
last_clustering,tNN-method Man page
map Source code
merge_clusters Man page
merge_clusters,EMM,character-method Man page Man page
merge_clusters,EMM,integer-method Man page
nclusters Man page
nclusters,tNN-method Man page
nstates Man page
nstates,TRACDS-method Man page
ntransitions Man page
ntransitions,TRACDS-method Man page
object.size,EMM-method Man page
object.size,TRACDS-method Man page
object.size,tNN-method Man page
plot Man page
plot,EMM,missing-method Man page Man page
plot,TRACDS,missing-method Man page
plot,tNN,missing-method Man page
predict Man page
predict,TRACDS-method Man page Man page
prune Man page
prune,EMM,numeric-method Man page
prune,EMM-method Man page
rare_clusters Man page
rare_clusters,EMM,numeric-method Man page
rare_clusters,tNN-method Man page
rare_transitions Man page
rare_transitions,EMM,numeric-method Man page
rare_transitions,TRACDS-method Man page
recluster Man page
recluster_hclust Man page
recluster_hclust,EMM-method Man page Man page
recluster_kmeans Man page
recluster_kmeans,EMM-method Man page Man page
recluster_pam Man page
recluster_pam,EMM-method Man page Man page
recluster_reachability Man page
recluster_reachability,EMM-method Man page
recluster_tNN Man page
recluster_tNN,EMM-method Man page
recluster_transitions Man page
recluster_transitions,EMM-method Man page
remove_clusters Man page
remove_clusters,EMM,character-method Man page Man page
remove_selftransitions Man page
remove_selftransitions,EMM-method Man page Man page
remove_transitions Man page
remove_transitions,EMM,character,character-method Man page Man page
remove_transitions,EMM,data.frame,missing-method Man page
remove_transitions,EMM,matrix,missing-method Man page
reset Man page
reset,TRACDS-method Man page
score Man page
score,EMM,EMM-method Man page
score,EMM,data.frame-method Man page Man page
score,EMM,matrix-method Man page Man page
score,EMM,numeric-method Man page Man page
show,EMM-method Man page
show,TRACDS-method Man page
size Man page
size,EMM-method Man page
smc_addState Source code
smc_addTransition Source code
smc_as.graph Source code
smc_as.igraph Source code
smc_compact Source code
smc_containsState Source code
smc_countMatrix Source code
smc_expand Source code
smc_fade Source code
smc_initialCounts Source code
smc_mergeStates Source code
smc_names2index Source code
smc_removeSelfTransition Source code
smc_removeState Source code
smc_removeTransition Source code
smc_setTransitions Source code
smc_size Source code
smc_states Source code
smooth_transitions Man page
smooth_transitions,EMM-method Man page
states Man page
states,TRACDS-method Man page
synthetic_stream Man page Source code
tNN Man page Source code
tNN-class Man page
transition Man page
transition,TRACDS,character,character-method Man page Man page
transition,TRACDS,data.frame,missing-method Man page Man page
transition,TRACDS,matrix,missing-method Man page
transition_matrix Man page
transition_matrix,TRACDS-method Man page Man page
transition_table Man page
transition_table,EMM,data.frame-method Man page
transition_table,EMM,matrix-method Man page
transition_table,EMM,numeric-method Man page
transitions Man page
transitions,TRACDS-method Man page
update Man page
update,TRACDS-method Man page
rEMM documentation built on May 2, 2019, 9:36 a.m.