NEWS.md

In rEMM: Extensible Markov Model for Modelling Temporal Relationships Between Clusters

Changes in version 1.2.0 (06/25/2022)

• added interface for package stream

Changes in version 1.1.1 (05/31/2022)

• score gained parameter random
• cleanup.

Changes in version 1.1.0 (10/27/2021)

• Moved to Github.
• Updated package structure to new standards.

Changes in version 1.0-11 (07/23/2015)

• Fixed NAMESPACE (non-standard imports)

Changes in version 1.0-9 (5/15/2015)

• Fixed dependencies in NAMESPACE
• Fixed problems with testthat

Changes in version 1.0-8 (1/14/2014)

• score: match_clusters can now be "exact", "nn" or "weighted", where weighted replaces all the weighted scores.
• added smooth_transitions (experimental)
• plus_one is now called prior (since it adds a uniform prior for transition probabilities)
• score has now an argument called normalize

Changes in version 1.0-7

• improved plot for tNN
• tNN: centroids stop moving to prevent 2 clusters from colliding
• fixed bug with getting transitions from a TRACDS object with 0 transitions
• find_clusters also accepts now a threshold factor for match_clusters
• score: weights for scoring are now normalized for threshold
• transition from igraph0 to igraph

Changes in version 1.0-6

• Improved performance for prune()
• Added object.size() which also reports memory used by the model
• Switched to igraph0

Changes in version 1.0-5

• Added several methods for score.
• Threshold for pruning and finding rare clusters/transitions is now less or equal instead of just less

Changes in version 1.0-3

• Finished the transition to reference objects implemented using environments.
• transition_table() now has for consistency also the default of add_one set to FALSE.
• last_clustering() was added as an accessor function to tNN.
• 'igraph' is now the default plot method.
• Added combining EMMs.
• Added reclustering using tNN.
• Added coloring of states and transitions to plot().
• Added coercion functions as.igraph() and as.graph from TRACDS.

Changes in version 1.0-2

• service release

rEMM documentation built on June 26, 2022, 1:06 a.m.