Files in rKOMICS
Minicircle Sequence Cluster (MSC) Analyses

MD5
NAMESPACE
DESCRIPTION
R/msc.seqs.R R/utils-pipe.R R/matrices.R R/msc.uc.R R/read.uc.R R/msc.matrix.R R/msc.subset.R R/exData.R R/msc.quality.R R/msc.heatmap.R R/msc.length.R R/msc.pca.R R/preprocess.R R/msc.similarity.R R/msc.depth.R R/msc.richness.R inst/doc/example.R inst/doc/example.pdf
inst/doc/example.Rnw
inst/extdata/HB31A1.minicircles.fasta
inst/extdata/LH741A1.mapping.stats.txt
inst/extdata/PER201A1.mapping.stats.txt
inst/extdata/PER002A1.minicircles.fasta
inst/extdata/LH925A1.mapping.stats.txt
inst/extdata/PER010A1.depth.stats.txt
inst/extdata/HB83A1.minicircles.fasta
inst/extdata/LH696A1.mapping.stats.txt
inst/extdata/La36A1.minicircles.fasta
inst/extdata/HB44A1.mapping.stats.txt
inst/extdata/LCA08A1.minicircles.fasta
inst/extdata/PER215A1.depth.stats.txt
inst/extdata/LC1418A1.depth.stats.txt
inst/extdata/LC2873A1.minicircles.fasta
inst/extdata/LH1099A1.depth.stats.txt
inst/extdata/PER011A1.mapping.stats.txt
inst/extdata/LC436A1.depth.stats.txt
inst/extdata/HR78A1.mapping.stats.txt
inst/extdata/CUM29A1.mapping.stats.txt
inst/extdata/HB44A1.depth.stats.txt
inst/extdata/PER260A1.mapping.stats.txt
inst/extdata/RO393A1.depth.stats.txt
inst/extdata/PER260A1.minicircles.fasta
inst/extdata/LC468A1.depth.stats.txt
inst/extdata/LC436A1.minicircles.fasta
inst/extdata/all.minicircles.circ.id85.uc
inst/extdata/LC26cl6A1.depth.stats.txt
inst/extdata/LC1419A1.depth.stats.txt
inst/extdata/HB31A1.mapping.stats.txt
inst/extdata/PER215A1.mapping.stats.txt
inst/extdata/LC1409A1.mapping.stats.txt
inst/extdata/LC1407A1.mapping.stats.txt
inst/extdata/LC2520A1.mapping.stats.txt
inst/extdata/PER065A1.depth.stats.txt
inst/extdata/LC2873A1.depth.stats.txt
inst/extdata/all.minicircles.circ.id90.uc
inst/extdata/PER016A1.minicircles.fasta
inst/extdata/PER012A1.depth.stats.txt
inst/extdata/LC2551A1.mapping.stats.txt
inst/extdata/PER005A1.depth.stats.txt
inst/extdata/PER215A1.minicircles.fasta
inst/extdata/LC106cl6A1.depth.stats.txt
inst/extdata/HB83A1.depth.stats.txt
inst/extdata/PER016A1.mapping.stats.txt
inst/extdata/LC1407A1.depth.stats.txt
inst/extdata/LH741A1.minicircles.fasta
inst/extdata/LC1409A1.minicircles.fasta
inst/extdata/PER014A1.depth.stats.txt
inst/extdata/LC2435A1.depth.stats.txt
inst/extdata/HB22A1.mapping.stats.txt
inst/extdata/LH2439A1.mapping.stats.txt
inst/extdata/HR80A1.mapping.stats.txt
inst/extdata/LC443A1.minicircles.fasta
inst/extdata/all.minicircles.circ.id100.uc
inst/extdata/all.minicircles.fasta
inst/extdata/LC443A1.depth.stats.txt
inst/extdata/HB44A1.minicircles.fasta
inst/extdata/LC2452A1.depth.stats.txt
inst/extdata/all.minicircles.circ.id97.uc
inst/extdata/LH827A1.depth.stats.txt
inst/extdata/HB22A1.depth.stats.txt
inst/extdata/LC1408A1.depth.stats.txt
inst/extdata/LH1099A1.mapping.stats.txt
inst/extdata/LC2435A1.mapping.stats.txt
inst/extdata/PER069A1.minicircles.fasta
inst/extdata/LC1565A1.minicircles.fasta
inst/extdata/LC1418A1.minicircles.fasta
inst/extdata/LC900A1.depth.stats.txt
inst/extdata/LC2421A1.minicircles.fasta
inst/extdata/D8A1.mapping.stats.txt
inst/extdata/HR78A1.depth.stats.txt
inst/extdata/LC443A1.mapping.stats.txt
inst/extdata/LC272A1.minicircles.fasta
inst/extdata/HB67A1.mapping.stats.txt
inst/extdata/LC1015A1.mapping.stats.txt
inst/extdata/La36A1.depth.stats.txt
inst/extdata/LC2434A1.depth.stats.txt
inst/extdata/HR434A1.minicircles.fasta
inst/extdata/HB67A1.minicircles.fasta
inst/extdata/RO393A1.minicircles.fasta
inst/extdata/LC2435A1.minicircles.fasta
inst/extdata/HR410A1.mapping.stats.txt
inst/extdata/PER086A1.depth.stats.txt
inst/extdata/HR410A1.minicircles.fasta
inst/extdata/LC1412A1.minicircles.fasta
inst/extdata/LC272A1.mapping.stats.txt
inst/extdata/HB55A1.mapping.stats.txt
inst/extdata/LC106cl6A1.minicircles.fasta
inst/extdata/LH825B2.minicircles.fasta
inst/extdata/LC2520A1.depth.stats.txt
inst/extdata/LCA09A1.depth.stats.txt
inst/extdata/D8A1.depth.stats.txt
inst/extdata/LH696A1.depth.stats.txt
inst/extdata/all.minicircles.circ.fasta
inst/extdata/HB56A1.minicircles.fasta
inst/extdata/PER069A1.depth.stats.txt
inst/extdata/HB56A1.mapping.stats.txt
inst/extdata/LCA08A1.mapping.stats.txt
inst/extdata/LC26cl6A1.minicircles.fasta
inst/extdata/LH2161A1.depth.stats.txt
inst/extdata/PER201A1.depth.stats.txt
inst/extdata/CUM29A1.minicircles.fasta
inst/extdata/HB67A1.depth.stats.txt
inst/extdata/PER010A1.minicircles.fasta
inst/extdata/HR80A1.depth.stats.txt
inst/extdata/LC2877A1.depth.stats.txt
inst/extdata/LC2434A1.mapping.stats.txt
inst/extdata/LCA04A1.mapping.stats.txt
inst/extdata/LC1412A1.mapping.stats.txt
inst/extdata/D8A1.minicircles.fasta
inst/extdata/HB55A1.depth.stats.txt
inst/extdata/LC2452A1.mapping.stats.txt
inst/extdata/all.minicircles.circ.id96.uc
inst/extdata/LC26cl6A1.mapping.stats.txt
inst/extdata/LC2877A1.minicircles.fasta
inst/extdata/LC2434A1.minicircles.fasta
inst/extdata/HR80A1.minicircles.fasta
inst/extdata/HB22A1.minicircles.fasta
inst/extdata/LC1412A1.depth.stats.txt
inst/extdata/LH696A1.minicircles.fasta
inst/extdata/LC468A1.minicircles.fasta
inst/extdata/all.minicircles.circ.id99.uc
inst/extdata/LH925A1.minicircles.fasta
inst/extdata/LH2355A1.minicircles.fasta
inst/extdata/all.minicircles.circ.id98.uc
inst/extdata/LC2452A1.minicircles.fasta
inst/extdata/HB86A1.mapping.stats.txt
inst/extdata/PER002A1.mapping.stats.txt
inst/extdata/LC1015A1.depth.stats.txt
inst/extdata/PER201A1.minicircles.fasta
inst/extdata/LC1408A1.minicircles.fasta
inst/extdata/PER005A1.mapping.stats.txt
inst/extdata/LC1408A1.mapping.stats.txt
inst/extdata/LCA04A1.minicircles.fasta
inst/extdata/LC106cl6A1.mapping.stats.txt
inst/extdata/LH827A1.minicircles.fasta
inst/extdata/PER011A1.depth.stats.txt
inst/extdata/PER094A1.mapping.stats.txt
inst/extdata/LH2439A1.minicircles.fasta
inst/extdata/PER065A1.minicircles.fasta
inst/extdata/HR410A1.depth.stats.txt
inst/extdata/PER094A1.minicircles.fasta
inst/extdata/LC900A1.minicircles.fasta
inst/extdata/PER014A1.mapping.stats.txt
inst/extdata/PER260A1.depth.stats.txt
inst/extdata/RO393A1.mapping.stats.txt
inst/extdata/LC2551A1.depth.stats.txt
inst/extdata/LC1419A1.mapping.stats.txt
inst/extdata/PER002A1.depth.stats.txt
inst/extdata/PER094A1.depth.stats.txt
inst/extdata/LC2873A1.mapping.stats.txt
inst/extdata/LH2355A1.depth.stats.txt
inst/extdata/HB56A1.depth.stats.txt
inst/extdata/HB55A1.minicircles.fasta
inst/extdata/LH249A1.mapping.stats.txt
inst/extdata/LH825B2.depth.stats.txt
inst/extdata/PER016A1.depth.stats.txt
inst/extdata/LH2161A1.minicircles.fasta
inst/extdata/LC2851A1.minicircles.fasta
inst/extdata/PER065A1.mapping.stats.txt
inst/extdata/CUM29A1.depth.stats.txt
inst/extdata/LC1407A1.minicircles.fasta
inst/extdata/LC2877A1.mapping.stats.txt
inst/extdata/HR78A1.minicircles.fasta
inst/extdata/PER014A1.minicircles.fasta
inst/extdata/LC272A1.depth.stats.txt
inst/extdata/PER069A1.mapping.stats.txt
inst/extdata/LC2851A1.mapping.stats.txt
inst/extdata/HR434A1.depth.stats.txt
inst/extdata/LC2421A1.depth.stats.txt
inst/extdata/HB83A1.mapping.stats.txt
inst/extdata/LH249A1.minicircles.fasta
inst/extdata/LH741A1.depth.stats.txt
inst/extdata/LH249A1.depth.stats.txt
inst/extdata/LH925A1.depth.stats.txt
inst/extdata/PER012A1.mapping.stats.txt
inst/extdata/LC1565A1.depth.stats.txt
inst/extdata/LH825B2.mapping.stats.txt
inst/extdata/LH827A1.mapping.stats.txt
inst/extdata/PER012A1.minicircles.fasta
inst/extdata/LH2161A1.mapping.stats.txt
inst/extdata/HR434A1.mapping.stats.txt
inst/extdata/HB86A1.depth.stats.txt
inst/extdata/LCA09A1.minicircles.fasta
inst/extdata/LC1409A1.depth.stats.txt
inst/extdata/LH1099A1.minicircles.fasta
inst/extdata/LC436A1.mapping.stats.txt
inst/extdata/LH2439A1.depth.stats.txt
inst/extdata/LCA09A1.mapping.stats.txt
inst/extdata/LCA08A1.depth.stats.txt
inst/extdata/LH2355A1.mapping.stats.txt
inst/extdata/PER005A1.minicircles.fasta
inst/extdata/LCA04A1.depth.stats.txt
inst/extdata/LC2551A1.minicircles.fasta
inst/extdata/PER011A1.minicircles.fasta
inst/extdata/all.minicircles.circ.id80.uc
inst/extdata/LC468A1.mapping.stats.txt
inst/extdata/LC900A1.mapping.stats.txt
inst/extdata/LC2520A1.minicircles.fasta
inst/extdata/PER086A1.minicircles.fasta
inst/extdata/LC1565A1.mapping.stats.txt
inst/extdata/PER086A1.mapping.stats.txt
inst/extdata/all.minicircles.circ.id95.uc
inst/extdata/LC1418A1.mapping.stats.txt
inst/extdata/La36A1.mapping.stats.txt
inst/extdata/PER010A1.mapping.stats.txt
inst/extdata/LC2851A1.depth.stats.txt
inst/extdata/HB86A1.minicircles.fasta
inst/extdata/LC1419A1.minicircles.fasta
inst/extdata/HB31A1.depth.stats.txt
inst/extdata/LC1015A1.minicircles.fasta
inst/extdata/LC2421A1.mapping.stats.txt
build/vignette.rds
build/partial.rdb
vignettes/example.Rnw
data/exData.rda
data/matrices.rda
man/rKOMICS.Rd man/msc.pca.Rd man/read.uc.Rd man/msc.subset.Rd man/msc.richness.Rd man/msc.uc.Rd man/msc.seqs.Rd man/msc.length.Rd man/pipe.Rd man/msc.similarity.Rd man/exData.Rd man/msc.heatmap.Rd man/matrices.Rd man/preprocess.Rd man/msc.depth.Rd man/msc.quality.Rd man/msc.matrix.Rd
rKOMICS documentation built on July 21, 2021, 5:07 p.m.