read.uc: Read in uc files

In rKOMICS: Minicircle Sequence Classes (MSC) Analyses

Read in uc files

Description

The read.uc function is used to read the output of clustering analyses from a UC file. The function stores the information in two tables: one for hit records (H) and one for cluster records (C).

Usage

read.uc(file)

Arguments

file	the name of the UC file that contains the clustering analysis results. The file should be specified with its full name, including the extension (e.g., all.minicircles.circ.id70.uc).

Value

hits	a table containing all the hit records from the UC file. Each row of the table represents a hit record, providing information about the alignment between a query sequence and a target sequence.
clusters	a table containing all the cluster records from the UC file. Each row of the table represents a cluster record, providing information about the clustering of sequences into clusters.
clustnumbers	a vector containing the cluster numbers (0-based). Each element of the vector represents a cluster identified in the clustering analysis.

rKOMICS documentation built on July 9, 2023, 7:46 p.m.