Description Usage Arguments Value
Clustering based on a percent identity, performed with VSEARCH, generates files in uc format. The read.uc function allows you to read in an uc file and store cluster and hit records in individual tables.
1 |
file |
the name of the uc file e.g. all.minicircles.circ.id70.uc |
hits |
a table containing all hit records. |
clusters |
a table containing all cluster records. |
clustnumbers |
a vector containing the cluster numbers (0-based). |
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