read.uc: Read in uc files
In rKOMICS: Minicircle Sequence Cluster (MSC) Analyses
Description
Usage
Arguments
Value
Description
Clustering based on a percent identity, performed with VSEARCH, generates files in uc format.
The read.uc function allows you to read in an uc file and store cluster and hit records in individual tables.
Usage
1
Arguments
file
the name of the uc file e.g. all.minicircles.circ.id70.uc
Value
hits
a table containing all hit records.
clusters
a table containing all cluster records.
clustnumbers
a vector containing the cluster numbers (0-based).
rKOMICS documentation built on July 21, 2021, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Clustering based on a percent identity, performed with VSEARCH, generates files in uc format. The read.uc function allows you to read in an uc file and store cluster and hit records in individual tables.
Usage
1 |
Arguments
file |
the name of the uc file e.g. all.minicircles.circ.id70.uc |
Value
hits |
a table containing all hit records. |
clusters |
a table containing all cluster records. |
clustnumbers |
a vector containing the cluster numbers (0-based). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.