read.uc: Read in uc files

Description Usage Arguments Value

View source: R/read.uc.R

Description

Clustering based on a percent identity, performed with VSEARCH, generates files in uc format. The read.uc function allows you to read in an uc file and store cluster and hit records in individual tables.

Usage

1

Arguments

file

the name of the uc file e.g. all.minicircles.circ.id70.uc

Value

hits

a table containing all hit records.

clusters

a table containing all cluster records.

clustnumbers

a vector containing the cluster numbers (0-based).


rKOMICS documentation built on July 21, 2021, 5:07 p.m.