PipelineCollections: Connect and schedule pipelines

In raveio: File-System Toolbox for RAVE Project

Connect and schedule pipelines

Description

Connect and schedule pipelines

Connect and schedule pipelines

Value

A list containing

id

the pipeline ID that can be used by deps

pipeline

forked pipeline instance

target_names

copy of names

depend_on

copy of deps

cue

copy of cue

standalone

copy of standalone

Public fields

verbose

whether to verbose the build

Active bindings

root_path

path to the directory that contains pipelines and scheduler

collection_path

path to the pipeline collections

pipeline_ids

pipeline ID codes

Methods

Public methods

• PipelineCollections$new()

• PipelineCollections$add_pipeline()

• PipelineCollections$build_pipelines()

• PipelineCollections$run()

• PipelineCollections$get_scheduler()

---

Method new()

Constructor

Usage

PipelineCollections$new(root_path = NULL, overwrite = FALSE)

Arguments

root_path

where to store the pipelines and intermediate results

overwrite

whether to overwrite if root_path exists

---

Method add_pipeline()

Add pipeline into the collection

Usage

PipelineCollections$add_pipeline(
  x,
  names = NULL,
  deps = NULL,
  pre_hook = NULL,
  post_hook = NULL,
  cue = c("always", "thorough", "never"),
  search_paths = pipeline_root(),
  standalone = TRUE,
  hook_envir = parent.frame()
)

Arguments

x

a pipeline name (can be found via pipeline_list), or a PipelineTools

names

pipeline targets to execute

deps

pipeline IDs to depend on; see 'Values' below

pre_hook

function to run before the pipeline; the function needs two arguments: input map (can be edit in-place), and path to a directory that allows to store temporary files

post_hook

function to run after the pipeline; the function needs two arguments: pipeline object, and path to a directory that allows to store intermediate results

cue

whether to always run dependence

search_paths

where to search for pipeline if x is a character; ignored when x is a pipeline object

standalone

whether the pipeline should be standalone, set to TRUE if the same pipeline added multiple times should run independently; default is true

hook_envir

where to look for global environments if pre_hook or post_hook contains global variables; default is the calling environment

---

Method build_pipelines()

Build pipelines and visualize

Usage

PipelineCollections$build_pipelines(visualize = TRUE)

Arguments

visualize

whether to visualize the pipeline; default is true

---

Method run()

Run the collection of pipelines

Usage

PipelineCollections$run(
  error = c("error", "warning", "ignore"),
  .scheduler = c("none", "future", "clustermq"),
  .type = c("callr", "smart", "vanilla"),
  .as_promise = FALSE,
  .async = FALSE,
  rebuild = NA,
  ...
)

Arguments

error

what to do when error occurs; default is 'error' throwing errors; other choices are 'warning' and 'ignore'

.scheduler, .type, .as_promise, .async, ...

passed to pipeline_run

rebuild

whether to re-build the pipeline; default is NA ( if the pipeline has been built before, then do not rebuild)

---

Method get_scheduler()

Get scheduler object

Usage

PipelineCollections$get_scheduler()

raveio documentation built on July 26, 2023, 5:29 p.m.