new_electrode: Create new electrode channel instance or a reference signal...

In raveio: File-System Toolbox for RAVE Project

Create new electrode channel instance or a reference signal instance

Description

Create new electrode channel instance or a reference signal instance

Usage

new_electrode(subject, number, signal_type, ...)

new_reference(subject, number, signal_type, ...)

Arguments

subject	characters, or a RAVESubject instance
number	integer in new_electrode, or characters in new_reference; see 'Details' and 'Examples'
signal_type	signal type of the electrode or reference; can be automatically inferred, but it is highly recommended to specify a value; see SIGNAL_TYPES
...	other parameters passed to class constructors, respectively

Details

In new_electrode, number should be a positive valid integer indicating the electrode number. In new_reference, number can be one of the followings:

'noref', or NULL

no reference is needed

'ref_X'

where 'X' is a single number, then the reference is another existing electrode; this could occur in bipolar-reference cases

'ref_XXX'

'XXX' is a combination of multiple electrodes that can be parsed by parse_svec. This could occur in common average reference, or white matter reference. One example is 'ref_13-16,24', meaning the reference signal is an average of electrode 13, 14, 15, 16, and 24.

Value

Electrode or reference instances that inherit RAVEAbstarctElectrode class

Examples

## Not run: 

# Download subject demo/DemoSubject (~500 MB)

# Electrode 14 in demo/DemoSubject
subject <- as_rave_subject("demo/DemoSubject")
e <- new_electrode(subject = subject, number = 14, signal_type = "LFP")

# Load CAR reference "ref_13-16,24"
ref <- new_reference(subject = subject, number = "ref_13-16,24",
                     signal_type = "LFP")
e$set_reference(ref)


# Set epoch
e$set_epoch(epoch = 'auditory_onset')

# Set loading window
e$trial_intervals <- list(c(-1, 2))

# Preview
print(e)

# Now epoch power
power <- e$load_data("power")
names(dimnames(power))

# Subset power
subset(power, Time ~ Time < 0, Electrode ~ Electrode == 14)

# Draw baseline
tempfile <- tempfile()
bl <- power_baseline(power, baseline_windows = c(-1, 0),
                     method = "decibel", filebase = tempfile)
collapsed_power <- collapse2(bl, keep = c(2,1))
# Visualize
dname <- dimnames(bl)
image(collapsed_power, x = dname$Time, y = dname$Frequency,
      xlab = "Time (s)", ylab = "Frequency (Hz)",
      main = "Mean power over trial (Baseline: -1~0 seconds)",
      sub = glue('Electrode {e$number} (Reference: {ref$number})'))
abline(v = 0, lty = 2, col = 'blue')
text(x = 0, y = 20, "Audio onset", col = "blue", cex = 0.6)

# clear cache on hard disk
e$clear_cache()
ref$clear_cache()


## End(Not run)

raveio documentation built on July 26, 2023, 5:29 p.m.