rba_uniprot_genecentric_search: Search Gene-Centric Proteins
View source: R/uniprot_proteomes.R
| rba_uniprot_genecentric_search | R Documentation |
Search Gene-Centric Proteins
Description
Using this function you can search UniProt for available gene-centrics from proteomes. For more information, see What are proteomes? and Automatic gene-centric isoform mapping for eukaryotic reference proteome entries. You may also refine your search with modifiers upid, accession and gene. See "Arguments section" for more information.
Usage
rba_uniprot_genecentric_search(upid = NULL, accession = NULL, gene = NULL, ...)
Arguments
upid |
UniProt Proteome identifier (UPID). You can supply up to 100 UPIDs. |
accession |
UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers. |
gene |
unique gene identifier(s) found in MOD, Ensembl, Ensembl Genomes, OLN, ORF or UniProt Gene Name. |
... |
rbioapi option(s). See |
Details
Note that this is a search function. Thus, you are not required to fill every argument; You may use whatever combinations of arguments you see fit for your query.
Value
a list containing gene-centric proteins search hits.
Corresponding API Resources
"GET https://ebi.ac.uk/proteins/api/genecentric"
References
The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
See Also
Other "UniProt - Proteomes":
rba_uniprot_genecentric(),
rba_uniprot_proteomes(),
rba_uniprot_proteomes_search()
Examples
rba_uniprot_genecentric_search(accession = "P59594")
rba_uniprot_genecentric_search(gene = "Spike")
rba_uniprot_genecentric_search(upid = "UP000000354")
