rba_uniprot_proteins_crossref: Get UniProt Entry by UniProt Cross-Reference Database and ID

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

Get UniProt Entry by UniProt Cross-Reference Database and ID

Description

UniProt Cross-Reference links protein Entities with cross-reference (external) databases. Using this function, you can retrieve a UniProt entity using external database name and protein ID in that database.

Usage

rba_uniprot_proteins_crossref(
  db_id,
  db_name,
  reviewed = NULL,
  isoform = NULL,
  ...
)

Arguments

db_id	The protein ID in the cross-reference (external) database.
db_name	cross-reference (external database) name.
reviewed	Logical: (Optional) If TRUE, only returns "UniProtKB/Swiss-Prot" (reviewed) entries; If FALSE, only returns TrEMBL (un-reviewed) entries.
isoform	Numeric: (Optional) you have two options: 0: Exclude isoforms. 1: Return isoforms only. see: Alternative products
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

List which each element is a UniProt entity that correspond to your supplied cross-reference database name and ID.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteins/{dbtype}:{dbid}"

References

• The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010

• Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

• Proteins API Documentation

• Citations note on UniProt website

See Also

Other "UniProt - Proteins": rba_uniprot_proteins(), rba_uniprot_proteins_search()

Examples

rba_uniprot_proteins_crossref("cd40", "hgnc")


rba_uniprot_proteins_crossref("cd40", "hgnc", reviewed = TRUE)


rba_uniprot_proteins_crossref("mica", "hgnc", isoform = 0)

rbioapi documentation built on April 4, 2025, 5:04 a.m.