rba_uniprot_proteomics_non_ptm: Get Proteomics data in UniProt

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

Get Proteomics data in UniProt

Description

UniProt maps proteomics data from different sources to the proteins' sequences. Using this function, you can retrieve all the non-post-translational modification proteomics features that has been map to a given UniProt protein's sequence.

Usage

rba_uniprot_proteomics_non_ptm(accession, ...)

Arguments

accession	UniProtKB primary or secondary accession.
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Details

UniProt categorizes proteomics data sources into three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project); each with corresponding API endpoints, and thus, rbioapi functions.

Value

A list containing the proteomics data features of your supplied UniProt protein's sequence.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics/nonPtm/{accession}"

References

• The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010

• Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

• Proteins API Documentation

• Citations note on UniProt website

See Also

Other "UniProt - Proteomics": rba_uniprot_proteomics_hpp(), rba_uniprot_proteomics_hpp_search(), rba_uniprot_proteomics_non_ptm_search(), rba_uniprot_proteomics_ptm(), rba_uniprot_proteomics_ptm_search(), rba_uniprot_proteomics_species()

Examples

  rba_uniprot_proteomics_non_ptm(accession = "P04234")

rbioapi documentation built on April 4, 2025, 5:04 a.m.