rba_uniprot_proteomics_ptm: Get Post-Translational Modification of UniProt Protein

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

Get Post-Translational Modification of UniProt Protein

Description

UniProt maps post-translational modification proteomics data from different sources to the proteins' sequences. Using this function, you can retrieve all the post-translational modification features that has been map to a given UniProt protein's sequence.

Usage

rba_uniprot_proteomics_ptm(accession, confidence_score = NULL, ...)

Arguments

accession	UniProtKB primary or secondary accession.
confidence_score	(Character) Valid values: "Bronze", "Silver", or "gold". UniProt classifies modified residues into three categories based on its false localization rate (FLR) across multiple dataset. See Large scale modified residue for more information.
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Details

see also: PTM / Processing section in UniProtKB

UniProt categorizes proteomics data sources into three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project); each with corresponding API endpoints, and thus, rbioapi functions.

Value

A list containing the post-translational modification features of your supplied UniProt protein's sequence.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics/ptm/{accession}"

References

• The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010

• Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

• Proteins API Documentation

• Citations note on UniProt website

See Also

Other "UniProt - Proteomics": rba_uniprot_proteomics_hpp(), rba_uniprot_proteomics_hpp_search(), rba_uniprot_proteomics_non_ptm(), rba_uniprot_proteomics_non_ptm_search(), rba_uniprot_proteomics_ptm_search(), rba_uniprot_proteomics_species()

Examples

rba_uniprot_proteomics_ptm(accession = "P04234")

rbioapi documentation built on April 4, 2025, 5:04 a.m.