rba_uniprot_taxonomy_lca: Get Lowest Common Ancestor (LCA) of Two Taxonomy Nodes

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

Get Lowest Common Ancestor (LCA) of Two Taxonomy Nodes

Description

Use this function to retrieve lowest common ancestor (LCA) of two taxonomy nodes in UniProt Taxonomy database

Usage

rba_uniprot_taxonomy_lca(ids, ...)

Arguments

ids	(numeric) Numeric vector of NCBI taxonomic identifiers, with minimum length of two.
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list with UniProt taxonomy information of your supplied taxonomy elements.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/ancestor/{ids}"

References

• The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010

• Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

• Proteins API Documentation

• Citations note on UniProt website

See Also

Other "UniProt - Taxonomy": rba_uniprot_taxonomy(), rba_uniprot_taxonomy_lineage(), rba_uniprot_taxonomy_name(), rba_uniprot_taxonomy_path(), rba_uniprot_taxonomy_relationship()

Examples

rba_uniprot_taxonomy_lca(c(9606,10090,9823,7712))

rbioapi documentation built on April 4, 2025, 5:04 a.m.