rba_uniprot_taxonomy_relationship: Get Shortest Path Between Two Taxonomy Nodes

In rbioapi: User-Friendly R Interface to Biologic Web Services' API

Get Shortest Path Between Two Taxonomy Nodes

Description

Use this function to retrieve the shortest path between two nodes in the taxonomy tree of UniProt Taxonomy database.

Usage

rba_uniprot_taxonomy_relationship(from, to, ...)

Arguments

from	NCBI taxonomic identifier of your initial node.
to	NCBI taxonomic identifier of your final node.
...	rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

a nested list containing the node which are in the shortest path between your supplied nodes.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/relationship"

References

• The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010

• Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

• Proteins API Documentation

• Citations note on UniProt website

See Also

Other "UniProt - Taxonomy": rba_uniprot_taxonomy(), rba_uniprot_taxonomy_lca(), rba_uniprot_taxonomy_lineage(), rba_uniprot_taxonomy_name(), rba_uniprot_taxonomy_path()

Examples

rba_uniprot_taxonomy_relationship(from = 9606, to = 10090)

rbioapi documentation built on April 4, 2025, 5:04 a.m.