rescue: Bootstrap Imputation for Single-Cell RNA-Seq Data

Given a log-transformed expression matrix and list of informative genes: subsample informative genes, cluster samples using shared nearest neighbors clustering, estimate missing expression values with the distribution mean of means extrapolated from these cell clusterings, and return an imputed expression matrix. See Tracy, S., Yuan, G.C. and Dries, R. (2019) <doi:10.1186/s12859-019-2977-0> for more details.

Getting started

Package details

AuthorSam Tracy & Ruben Dries
MaintainerSam Tracy <>
LicenseGPL-2 | GPL-3
Package repositoryView on CRAN
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rescue documentation built on July 18, 2020, 5:06 p.m.