constructNN: Nearest Network

In rescue: Bootstrap Imputation for Single-Cell RNA-Seq Data

Description

Construct a nearest neighbour network based on previously computed PCs

Usage

constructNN(
  reduced_object,
  k_neighbors = 30,
  minimum_shared = 5,
  top_shared = 3,
  verbose = F,
  ...
)

Arguments

reduced_object	PC reduction matrix
k_neighbors	Number of k neighbors to use
minimum_shared	Minimum shared neighbors
top_shared	Keep at ...
verbose	Be verbose
...	Additional parameters

Value

NN network as igraph object

rescue documentation built on July 18, 2020, 5:06 p.m.