clusterLouvain: Cluster Cells via Louvain Algorithm

In rescue: Bootstrap Imputation for Single-Cell RNA-Seq Data

Description

Cluster cells using a NN-network and the Louvain algorithm from the community module in Python

Usage

clusterLouvain(
  nn_network,
  python_path = NULL,
  resolution = 1,
  weight_col = NULL,
  louv_random = F,
  set_seed = T,
  seed_number = 0,
  ...
)

Arguments

nn_network	Constructed nearest neighbor network to use
python_path	Specify specific path to python if required
resolution	Resolution
weight_col	Weight column
louv_random	Random
set_seed	Set seed
seed_number	Number for seed
...	Additional parameters

Value

A character vector of cluster labels

rescue documentation built on July 18, 2020, 5:06 p.m.